View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10096_low_13 (Length: 248)
Name: NF10096_low_13
Description: NF10096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10096_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 30651740 - 30651858
Alignment:
| Q |
14 |
agatgattgagaaacttgacggtgtggaaaaagcatattccaaaataataatctataagaaaaatggaggaataaatcattagttagtttttgttctcaa |
113 |
Q |
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| T |
30651740 |
agatgattgagaaacttgacggtgtggaaaaagcatattccaaaataataatctataagaaaaatggaggaataaatcattagttagtttttgttctcaa |
30651839 |
T |
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| Q |
114 |
ttattaggatcactttatc |
132 |
Q |
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| T |
30651840 |
ttattaggatcattttatc |
30651858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 31778086 - 31778204
Alignment:
| Q |
14 |
agatgattgagaaacttgacggtgtggaaaaagcatattccaaaataataatctataagaaaaatggaggaataaatcattagttagtttttgttctcaa |
113 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31778086 |
agatgattgaggaacttgacggtgtggaaaaagcatattccgaaataataatctataagaaaaatggaggaatagatcattagttagtttttgttctcaa |
31778185 |
T |
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| Q |
114 |
ttattaggatcactttatc |
132 |
Q |
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|||||||||||| |||||| |
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| T |
31778186 |
ttattaggatcattttatc |
31778204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 30651940 - 30652037
Alignment:
| Q |
134 |
tgtaattctgaatgttgcagctttgacaaaattatattgaaagtatttgtactatctttctatttgttt-attatagttctatttgcaagatgatatg |
230 |
Q |
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| T |
30651940 |
tgtaattatgaatgttgcagctttgacaaatttatattgaaagtatttgtactatctttctatttgtttaattatagttctatttgcaagatgatatg |
30652037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 31778288 - 31778353
Alignment:
| Q |
134 |
tgtaattctgaatgttgcagctttgacaaaattatattgaaagtatttgtactatctttctatttg |
199 |
Q |
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| T |
31778288 |
tgtaattatgaatgttgcagctttgacaattttatattgaaagtatttgtaccgtctttctatttg |
31778353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 25628365 - 25628478
Alignment:
| Q |
14 |
agatgattgagaaacttgacggtgtggaaaaagcatattccaaaataataatctataagaaaaatggaggaataaatcattagttagttt---ttgttct |
110 |
Q |
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||||||||||| ||||||||||||| ||| || ||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25628365 |
agatgattgaggaacttgacggtgttgaagaaacatattcaagaattatattctataagaaaaatggaggaataaatcattagttagtttttgttgttct |
25628464 |
T |
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| Q |
111 |
caattattaggatc |
124 |
Q |
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|||||||||||||| |
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| T |
25628465 |
caattattaggatc |
25628478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 25628993 - 25629058
Alignment:
| Q |
134 |
tgtaattctgaatgttgcagctttgacaaaattatattgaaagtatttgtactatctttctatttg |
199 |
Q |
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||||||| ||||| |||||||||| || | ||||||| |||||||||||| |||||||||||||| |
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| T |
25628993 |
tgtaattatgaattttgcagctttaaccattttatattaaaagtatttgtaatatctttctatttg |
25629058 |
T |
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