View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10096_low_16 (Length: 229)

Name: NF10096_low_16
Description: NF10096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10096_low_16
NF10096_low_16
[»] chr4 (2 HSPs)
chr4 (9-229)||(8978706-8978926)
chr4 (7-56)||(17116401-17116450)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 8978706 - 8978926
Alignment:
Q  9 aaggtgtgaaaggagcatatgcatctttacccgcaaccactaaatgctcaagaagtgtgtgcgagtggtgaaagccttttaagaaaaaataaagtatttg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8978706 aaggtgtgaaaggagcatatgcatctttacccgcaaccactaaatgctcaagaagtgtgtgcgagtggtgaaagccttttaagaaaaaataaagtatttg 8978805  T
Q  109 aatatgaataggtttaatggaaaacactaaagtgtatgcgagcaagaagattgaaagaatatcgtaatattatttgtcagaatattcttttttcaggagt 208  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  8978806 aatatgaataggtttaatggaaaacagtaaagtgtatgcgagcaagaagattgaaagaatatcgtaatattatttgtcagaatattctttttctaggagt 8978905  T
Q  209 ttgtcatgtttttctctcaat 229  Q
    ||||||| |||||||||||||    
T  8978906 ttgtcatttttttctctcaat 8978926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 17116401 - 17116450
Alignment:
Q  7 gtaaggtgtgaaaggagcatatgcatctttacccgcaaccactaaatgct 56  Q
    ||||||||||||| || ||| |||||||||||| |||| |||||||||||    
T  17116401 gtaaggtgtgaaatgaacatctgcatctttaccggcaatcactaaatgct 17116450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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