View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10096_low_18 (Length: 208)
Name: NF10096_low_18
Description: NF10096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10096_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 4218185 - 4218368
Alignment:
| Q |
17 |
gttgcaattttgaatggctatagtgctgagggtactggaagaggtaatgaacctaaagatgatcgtatttacaaatctcaaaagttttttggttgttcct |
116 |
Q |
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| T |
4218185 |
gttgcaattttgaatggctatagtgctgagggtactggaagaggtaatgaacctaaagatgatcgtatttacaaatctcaaaagttttttggttgttcct |
4218284 |
T |
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| Q |
117 |
tttggggtcagatgtgttacttctttcatctctattgtgatgaatacaataagtattgtactacttctcagcctccttcttctc |
200 |
Q |
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| T |
4218285 |
tttggggtcagatgtgttacttctttcatctctattgtgatgaatacaataagtattgtgctacttctcagcctccttcttctc |
4218368 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 5398597 - 5398638
Alignment:
| Q |
23 |
attttgaatggctatagtgctgagggtactggaagaggtaat |
64 |
Q |
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| T |
5398597 |
attttgaatggctatagtgctgagggtgcaggaagaggtaat |
5398638 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 41804438 - 41804470
Alignment:
| Q |
71 |
aaagatgatcgtatttacaaatctcaaaagttt |
103 |
Q |
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| T |
41804438 |
aaagatgatggtatttacaaatctcaaaagttt |
41804470 |
T |
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