View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10096_low_2 (Length: 462)
Name: NF10096_low_2
Description: NF10096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10096_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 92 - 453
Target Start/End: Complemental strand, 33488795 - 33488439
Alignment:
| Q |
92 |
ttcttaacaaatattttatcaaaacaaacaaaatacttatataatattgacttaagcagtctcttgtatattttgattatttttcagttgatgatgttgt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
33488795 |
ttcttaacaaatattttatcaaaacaaacaaaatacttatataatattgacttaagcagtctcttgtatattttgattatttttcatttgatg---ttgt |
33488699 |
T |
|
| Q |
192 |
gactaaaatgatctcatctcatacaaggtaatcttgcacgtagatttaataccatggcttggtgattgaagggacgaatataaagaagttgaagctataa |
291 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
33488698 |
gaccaaaatgatctcatctcatacaaggtaatcttgcacgtagatttaataccatggcttggtgattggagggacgaata--aagaagttgaagctataa |
33488601 |
T |
|
| Q |
292 |
tgaaggtgtggaatgagccttacaaacaaaccgagtttatactccatttcatagtttatggagtataaacggaccatttaacagagggactaaacagtca |
391 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33488600 |
tgaaggtgtggaatgaaccttacaaacaaaccgagtttatactccatttcatagtttatagagtataaacggaccatttaacagagggactaaacagtca |
33488501 |
T |
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| Q |
392 |
cattactttacatgatttaattatttttcttaattttctgaccaagattatttcatctcact |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33488500 |
cattactttacatgatttaattatttttcttaattttctgaccaagattatttcatctcact |
33488439 |
T |
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