View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10096_low_3 (Length: 347)
Name: NF10096_low_3
Description: NF10096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10096_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 10150588 - 10150915
Alignment:
| Q |
16 |
ctaaacttgtagggaatgttaacaccacatttgccagggagagcagcagcttggttgttattcaagcgagcaatggtaccagcagcatttttcaagcagt |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
10150588 |
ctaaacttatagggaatgttaacaccacatttgccagggagagcagcagcttggttgttattcaagcgagcaatgttaccagcagcccttttcaagcagt |
10150687 |
T |
|
| Q |
116 |
tgcaagcagtcttgcgggcggggccggtgttggcggcaccgttaagtttcttcactccaccacagcatgctgcagatggaccaggaccaccttgaagata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10150688 |
tgcaagcagtcttgcgggcggggccggtgttggcggcaccgttaagtttcttcactccaccacagcatgctgcagatggaccaggaccaccttgaagata |
10150787 |
T |
|
| Q |
216 |
agtaatgcatggagtaaggtaaccaactacttgtccacatgtgactgcctctgccattggtgcactaaccaccaccatgcacataattgcaaccacaatt |
315 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10150788 |
agtaatacatggagtaaggaaaccaactacttgtccacatgtgactgcctctgccattggtgcactaaccaccaccatgcacataattgcagccacaatt |
10150887 |
T |
|
| Q |
316 |
gcaactctcaaacttgcctttgcttctc |
343 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |
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| T |
10150888 |
gcaactctcaaacttgccattgtttctc |
10150915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 10137102 - 10137429
Alignment:
| Q |
16 |
ctaaacttgtagggaatgttaacaccacatttgccagggagagcagcagcttggttgttattcaagcgagcaatggtaccagcagcatttttcaagcagt |
115 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
10137102 |
ctaaacttatagggaattttaacaccacatttgccaggaagagcagcagcttggttgttattcaaacgagcaatggtaccagcagcacttttcaagcagt |
10137201 |
T |
|
| Q |
116 |
tgcaagcagtcttgcgggcggggccggtgttggcggcaccgttaagtttcttcactccaccacagcatgctgcagatggaccaggaccaccttgaagata |
215 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10137202 |
tgcaagcagccttgcgggcagggccggtgttggcggcagcattaagtttcttcactccaccacagcatgctgcagatggaccaggaccaccttgaagata |
10137301 |
T |
|
| Q |
216 |
agtaatgcatggagtaaggtaaccaactacttgtccacatgtgactgcctctgccattggtgcactaaccaccaccatgcacataattgcaaccacaatt |
315 |
Q |
| |
|
||||||||||||| ||||| | ||| || ||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10137302 |
agtaatgcatggaataaggctatcaattagttgaccacatgtggctgcctctgctattggtgcactagccaccaccatgcacataattgcaaccacaatt |
10137401 |
T |
|
| Q |
316 |
gcaactctcaaacttgcctttgcttctc |
343 |
Q |
| |
|
| ||||||||| |||||| ||| ||||| |
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|
| T |
10137402 |
gtaactctcaagcttgccattgtttctc |
10137429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 9786429 - 9786667
Alignment:
| Q |
21 |
cttgtagggaatgttaacaccacatttgccagggagagcagcagcttggttgttattcaagcgagcaatggtaccagcagcatttttcaagcagttgcaa |
120 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||| ||| |||||| | || ||| | |||||||||| ||||||||||||||||| |
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| T |
9786429 |
cttgtatggaatgttaacaccacatttgccagggagaccagcagctatgttaggattcaaaccagaaatagcaccagcagcacttttcaagcagttgcaa |
9786528 |
T |
|
| Q |
121 |
gcagtcttgcgggcggggccggtgttggcggcaccgttaagtttcttcactccaccacagcatgctgcagatggaccaggaccaccttgaagataagtaa |
220 |
Q |
| |
|
|||| || ||| | || ||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||||| || |
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|
| T |
9786529 |
gcagcctgacggtcaggcgtggtagtggcggcactgttaagtctcttgactccaccacagcatgctgcagatggaccagaaccacctttaagatatccaa |
9786628 |
T |
|
| Q |
221 |
tgcatggagtaaggtaaccaactacttgtccacatgtga |
259 |
Q |
| |
|
||||||||| ||| ||||| |||| ||||||||||| |
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|
| T |
9786629 |
tgcatggagcaagagaaccagttactgttccacatgtga |
9786667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 9812331 - 9812538
Alignment:
| Q |
21 |
cttgtagggaatgttaacaccacatttgccagggagagcagcagcttggttgttattcaagcgagcaatggtaccagcagcatttttcaagcagttgcaa |
120 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||| | ||||||| | | ||| | |||||| || | ||||||||||||||| |
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| T |
9812331 |
cttgtatggaatgttaacaccacatttgccagggagagcagaagctgcagcggtattcaaacctgaaatagcaccagctgcttgtttcaagcagttgcat |
9812430 |
T |
|
| Q |
121 |
gcagtcttgcgggcggggccggtgttggcggcaccgttaagtttcttcactccaccacagcatgctgcagatggaccaggaccaccttgaagataagtaa |
220 |
Q |
| |
|
|||| || ||| | || |||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||| || |
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| T |
9812431 |
gcagcctgacggtcaggtgtggtggcggcggcaccgttaagtctcttgactccaccacagcatgctggagatggaccaggaccacctttaagatatccaa |
9812530 |
T |
|
| Q |
221 |
tgcatgga |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
9812531 |
tgcatgga |
9812538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 10146474 - 10146563
Alignment:
| Q |
254 |
atgtgactgcctctgccattggtgcactaaccaccaccatgcacataattgcaaccacaattgcaactctcaaacttgcctttgcttctc |
343 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||| |
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| T |
10146474 |
atgtaactgcctcagccattggtgcactaaccaccaccatgcacataattgcaaccacaaatgcaactctcatacttgccattgtttctc |
10146563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 9832246 - 9832039
Alignment:
| Q |
21 |
cttgtagggaatgttaacaccacatttgccagggagagcagcagcttg-gttgttattcaagcgagcaatggtaccagcagcatttttcaagcagttgca |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||| | ||| |||||| | | ||| | |||||| || | ||||||||||||||| |
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|
| T |
9832246 |
cttgtatggaatgttaacaccacatttgccagggagagcagaagctgcagctgt-attcaaacctgaaatagcaccagctgcttgtttcaagcagttgca |
9832148 |
T |
|
| Q |
120 |
agcagtcttgcgggcggggccggtgttggcggcaccgttaagtttcttcactccaccacagcatgctgcagatggaccaggaccaccttgaagataagta |
219 |
Q |
| |
|
|||| || ||| | || |||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||| | |
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|
| T |
9832147 |
tgcagcctgacggtcaggtgtggtggcggcggcaccgttaagtctcttgactccaccacagcatgctggagatggaccaggaccacctttaagatatcca |
9832048 |
T |
|
| Q |
220 |
atgcatgga |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
9832047 |
atgcatgga |
9832039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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