View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10096_low_6 (Length: 278)
Name: NF10096_low_6
Description: NF10096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10096_low_6 |
 | |
|
| [»] scaffold1064 (1 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 9238492 - 9238226
Alignment:
| Q |
1 |
aacatattgtgactagatttcgtttcatttagaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9238492 |
aacatattgagactagatttcgtttcatttggaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctt |
9238393 |
T |
|
| Q |
101 |
tacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9238392 |
tacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaaggggaagtattagaatatg |
9238293 |
T |
|
| Q |
201 |
aatacataattggttagatataatattaatgtgattcacattgcaagcataatctctattcttctct |
267 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9238292 |
aatacatcattggttagatataatattaatgtgattcacattgcaagcataatctctattcttctct |
9238226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26905073 - 26905298
Alignment:
| Q |
1 |
aacatattgtgactagatttcgtttcatttagaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctt |
100 |
Q |
| |
|
|||| |||| ||||||||| | |||||| | ||||| ||| ||||| ||||||||| | || |||||||||| | || ||||||||||| |||||| |
|
|
| T |
26905073 |
aacacattgagactagattccacttcattggggagcagatgaataatgaaatgattgagctacattattgtcctatagaactgcagcttgcatgtggctt |
26905172 |
T |
|
| Q |
101 |
tacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatatg |
200 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||||||| ||||| |||||||||||||| || ||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
26905173 |
tacaaaggctttgaagcttgacaaatttaaatttttaaggaagaaacttggtgttgttaatatttagcagttatgaattaatggggagtattagtatatt |
26905272 |
T |
|
| Q |
201 |
aatacataattggttagatataatat |
226 |
Q |
| |
|
||||||||| || | ||||||||||| |
|
|
| T |
26905273 |
aatacataactgttgagatataatat |
26905298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 5706947 - 5707123
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| || || || ||| || | || ||||| |||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
5706947 |
agcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatt |
5707046 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatatgaatacataattg |
212 |
Q |
| |
|
| ||||||| ||| | |||| | || |||||||||||||| ||||| |||||||||| |||||| ||| ||||||| |
|
|
| T |
5707047 |
tgtgaggaagaaattaagtgtatttaatattcagcagttatg-attaa-ggggagtattggaatattaatcaataattg |
5707123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 50935462 - 50935548
Alignment:
| Q |
112 |
tgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatat |
199 |
Q |
| |
|
||||||||||||||||||| || |||| || ||| | ||||| | || ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
50935462 |
tgaagcttgacatatttgagttcctgagaaagaaagtaggtgtctttaatattcaacagttatga-ttaagggggagtattagaatat |
50935548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 51 - 259
Target Start/End: Complemental strand, 2417 - 2209
Alignment:
| Q |
51 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttg |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
2417 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgaaatattttaatttttgaggaaaaaacttg |
2318 |
T |
|
| Q |
151 |
gtgttgtgaacattcagcagttatgaattaagggggagtattagaatatgaatacataattggttagatataatattaatgtgattcacattgcaagcat |
250 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
2317 |
gtgttgtgaacattaagcagttatgaattaagggggagtattagaatattaatacataattggttagatataatattaatgagattcacattgtaagcat |
2218 |
T |
|
| Q |
251 |
aatctctat |
259 |
Q |
| |
|
||||||||| |
|
|
| T |
2217 |
aatctctat |
2209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 38099548 - 38099340
Alignment:
| Q |
1 |
aacatattgtgactagatttcgtttcatttagaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctt |
100 |
Q |
| |
|
|||| |||| ||||||||| | ||||||| | ||| |||||||||||||||||||| | || |||||||||||| ||||| |||| ||| ||||||| |
|
|
| T |
38099548 |
aacacattgagactagattccatttcattagggagcgagtgactaatggtatgattgaactacaatattgtcctacagaattgtagctagcatatggctt |
38099449 |
T |
|
| Q |
101 |
tacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatatg |
200 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38099448 |
tacaaaggctttgaagcttggcatatttgaatttttgaggaagaaacttggtgttgttaacattcagcaattatgaattaagggggagtgttagaatatt |
38099349 |
T |
|
| Q |
201 |
aatacataa |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
38099348 |
aatacataa |
38099340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 203
Target Start/End: Original strand, 302116 - 302284
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| || || || ||| || | || ||||| ||||| |||||||| | |||||||||||| ||||||||| |
|
|
| T |
302116 |
agcaggtgactaatggaatgattgagctgcactactgccccacaaaactacaacttgctgatggttttacaaaagcaatgaagcttgacagatttgaatt |
302215 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatatgaat |
203 |
Q |
| |
|
|||||||| ||| | |||||| | || ||||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
302216 |
cttgaggaagaaattaggtgtttttaatattcaacagttatg-attaagggggagtattggaatatgaat |
302284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 40 - 199
Target Start/End: Complemental strand, 39190997 - 39190839
Alignment:
| Q |
40 |
tgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatttttgag |
139 |
Q |
| |
|
|||||||||| ||||||||| |||| || || || ||| || |||| ||||| ||||| ||| |||| | |||||||||||| ||||||||| ||||| |
|
|
| T |
39190997 |
tgactaatggaatgattgagctgcactactgccccacagaactgcaacttgctgatggttttgcaaaagcagtgaagcttgacagatttgaattcttgag |
39190898 |
T |
|
| Q |
140 |
gaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatat |
199 |
Q |
| |
|
||| ||| | |||||| | || || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39190897 |
gaagaaattaggtgtttttaatatgcagcagttatg-attaagggggagtattagaatat |
39190839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 3461563 - 3461684
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| ||||| || ||| || |||| ||||| ||||| ||||||||| | | |||||||||||||||||||| |
|
|
| T |
3461563 |
agcatgtgactaatggaatgattgagctgcactattgccccacagaactgcaacttgctgatggttttacaaaggcagtaaagcttgacatatttgaatt |
3461662 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgtt |
155 |
Q |
| |
|
||||| || ||||||||||| |
|
|
| T |
3461663 |
cttgagaaaggaacttggtgtt |
3461684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 6414347 - 6414556
Alignment:
| Q |
1 |
aacatattgtgactagatttcgtttcatttagaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctt |
100 |
Q |
| |
|
|||| |||| ||||||||| ||||||| | |||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||| || |
|
|
| T |
6414347 |
aacacattgggactagattctatttcattagggagcaggtgactaatggagtgattgagttgcattactgtcctacagaattgcagcttgcagatggttt |
6414446 |
T |
|
| Q |
101 |
tacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaa-gggggagtattagaatat |
199 |
Q |
| |
|
||||||| ||||||||||||| | |||| || |||||||||| ||||||| |||||| |||||||||||||||| |||||| |||||||||||||||| | |
|
|
| T |
6414447 |
tacaaaggctttgaagcttgatagatttaaacttttgaggaagaaacttgttgttgttaacattcagcagttattaattaaggggggagtattagaatgt |
6414546 |
T |
|
| Q |
200 |
gaatacataa |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
6414547 |
taatacataa |
6414556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 37786979 - 37786815
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| || || || ||| || | || ||||| ||||| |||||||| | |||||||||||| ||||||||| |
|
|
| T |
37786979 |
agcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacagatttgaatt |
37786880 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatat |
199 |
Q |
| |
|
|||||||| ||| | |||||| | || |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
37786879 |
cttgaggaataaattaggtgtttttaatattcagcagttatg-attaagggggagtattggaatat |
37786815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 26794277 - 26794234
Alignment:
| Q |
226 |
ttaatgtgattcacattgcaagcataat--ctctattcttctct |
267 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26794277 |
ttaatgagattcacattgcaagcataatctctctattcttctct |
26794234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 49100 - 49257
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || || || ||| || | || ||||| ||||| |||||||| | |||||||||||| ||||||||| |
|
|
| T |
49100 |
agcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaatt |
49199 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtatt |
192 |
Q |
| |
|
|||||||| ||| | |||||| | || |||||| ||||||| |||||||||||||||| |
|
|
| T |
49200 |
cttgaggaagaaattaggtgttcttaatattcagtagttatg-attaagggggagtatt |
49257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 30380430 - 30380606
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||||||||||||||| ||||||||| | || || | | | ||| || |||| |||||| |||| |||||||| | ||||||||||||||||| |||| |
|
|
| T |
30380430 |
agcaggtgactaatggaatgattgagctacactactatacaacagaactgcaacttgcatatgg-tttacaaaagcagtgaagcttgacatattttaatt |
30380528 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatatgaatacataattg |
212 |
Q |
| |
|
|||||||||||||||||||||| | | |||| |||||||| |||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
30380529 |
tttgaggaaaaaacttggtgtttttgatgttcaacagttatg-attaagggaaagtattagaatattaatcaataattg |
30380606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 296818 - 297016
Alignment:
| Q |
1 |
aacatattgtgactagatttcgtttcatttagaagcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctt |
100 |
Q |
| |
|
|||| |||| ||| ||||| | ||||||| | |||||||||||||||| ||||| |||||||| || || || ||| || | || |||| ||||| || |
|
|
| T |
296818 |
aacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaacttgttgatggttt |
296917 |
T |
|
| Q |
101 |
tacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtg-ttgtgaacattcagcagttatgaattaagggggagtattagaatat |
199 |
Q |
| |
|
|||||| | ||||||||||| ||||||||| |||||||| ||| | |||| || | || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
296918 |
tacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttatg-attaagggggagtattagaatat |
297016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 35898387 - 35898508
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||| | || || |||| ||||| ||||||||| |||| | ||||| |||||| ||||||||| |
|
|
| T |
35898387 |
agcaggtgactaatggaatgattgagctgcactattgctccacggaactgcaacttgcttatggctttaaaaaggcagtgaagtttgacagatttgaatt |
35898486 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgtt |
155 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
35898487 |
cttgaggaaggaacttggtgtt |
35898508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 28248938 - 28249095
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || || || ||| || | || ||||| ||||| |||||||| | |||||||||||| ||||||||| |
|
|
| T |
28248938 |
agcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaatt |
28249037 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtatt |
192 |
Q |
| |
|
|||||||| ||| | |||||| | || |||||| ||||||| |||||||||||||||| |
|
|
| T |
28249038 |
cttgaggaagaaattaggtgttcttaatattcagtagttatg-attaagggggagtatt |
28249095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 29011122 - 29010973
Alignment:
| Q |
44 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatttttgaggaaa |
143 |
Q |
| |
|
|||||| ||| ||||| |||||| |||||||||| || |||| |||||| |||| ||||| || ||||||| ||||||| |||| | ||||| ||||| |
|
|
| T |
29011122 |
taatggaatggttgagctgcagttttgtcctacagaactgcaacttgcatatggttttactaaagctttgaaacttgacaaatttaagttttttaggaag |
29011023 |
T |
|
| Q |
144 |
aaacttggtgttgtgaacattcagcagttatgaattaagggggagtatta |
193 |
Q |
| |
|
|||||||||||| | | ||||| ||||||||||||||| ||||||||| |
|
|
| T |
29011022 |
aaacttggtgttttcagtattcaacagttatgaattaagatggagtatta |
29010973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 11187090 - 11186979
Alignment:
| Q |
85 |
agcttgcagatggctttacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaaggg |
184 |
Q |
| |
|
||||||||||||| |||||||| | |||| ||| || ||||||||||||||||||| ||||| ||| || | | ||||||||||||| |||||||| |
|
|
| T |
11187090 |
agcttgcagatggttttacaaaagcagtgaaacttcacgtatttgaatttttgaggaagaaactaggtatttttgatgttcagcagttatg-attaaggg |
11186992 |
T |
|
| Q |
185 |
ggagtattagaat |
197 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11186991 |
ggagtattagaat |
11186979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 50778482 - 50778361
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||||||||||||| | ||||||||| |||| ||||| || ||| || |||| ||||| ||||||||||||||| | | |||||||||| ||||||||| |
|
|
| T |
50778482 |
agcaggtgactaattgaatgattgagctgcactattgccccacagaactgcaacttgctgatggctttacaaaggcagtaaagcttgacagatttgaatt |
50778383 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgtt |
155 |
Q |
| |
|
||| ||||| ||||||||||| |
|
|
| T |
50778382 |
ttttaggaaggaacttggtgtt |
50778361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 14233893 - 14234049
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||| || | |||| ||||||||||| ||||| ||| | | || ||||||| ||||||||| |
|
|
| T |
14233893 |
agcaggtgactaatggaatgattgaggtgcaatattgtcccactgagctgcaacttgcagatggttttactaaggcagtaaaacttgacagatttgaatt |
14233992 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgttgtg-aacattcagcagttatgaattaagggggagt |
189 |
Q |
| |
|
||| ||||| |||||||||||| | || ||||||||||| ||||||| ||||||| |
|
|
| T |
14233993 |
ttttaggaagaaacttggtgtttttcaatgttcagcagttaagaattaaaggggagt |
14234049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 31000575 - 31000638
Alignment:
| Q |
126 |
tttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagt |
189 |
Q |
| |
|
||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
31000575 |
tttgaatttttgaggaagaaacttgatgtttttaacattcagcagttatgaattaagggggagt |
31000638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 18641326 - 18641150
Alignment:
| Q |
34 |
agcaggtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatt |
133 |
Q |
| |
|
|||| ||||||||||| ||||||||| |||| || || || ||| || | || ||||| |||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
18641326 |
agcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatt |
18641227 |
T |
|
| Q |
134 |
tttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggggagtattagaatatgaatacataattg |
212 |
Q |
| |
|
| ||||||| ||| | |||| | || |||||||||||||| ||||| |||||||||| |||||| ||| ||||||| |
|
|
| T |
18641226 |
tgtgaggaagaaattaagtgtatttaatattcagcagttatg-attaa-ggggagtattggaatattaatcaataattg |
18641150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 1663192 - 1663244
Alignment:
| Q |
133 |
ttttgaggaaaaaacttggtgttg-tgaacattcagcagttatgaattaaggg |
184 |
Q |
| |
|
|||| ||||| |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
1663192 |
tttttaggaagaaacttggtgtttctcaacattcagcagttatgaattaaggg |
1663244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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