View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10097_low_14 (Length: 224)
Name: NF10097_low_14
Description: NF10097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10097_low_14 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 9193964 - 9194117
Alignment:
| Q |
75 |
aaacctaacagataaaaaattgcacactagatccaatcctatttctctaat----gagacaataccatccctccgagataagagccggtgatatgtactt |
170 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9193964 |
aaacctaccagataaaaaattgcacactaactccaattctatttctctaattaatgagacaataccatccctccgagataagagccggtgatatgcactt |
9194063 |
T |
|
| Q |
171 |
tttgttttgtattctccgtttaaattgtctatccacacccaagtgtcagcaatt |
224 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9194064 |
tttgttgtgtattcttcgtttaaattgtctatccacacccaagggtcagcaatt |
9194117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 9175270 - 9175338
Alignment:
| Q |
4 |
gctttaatagcacttttaagtgttatttaaaggg-aaaaagtgctattaaagtctctttttggcgtagt |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
9175270 |
gctttaatagcacttttaagtgttatttaaagggaaaaaagtgctattaaagtctctttttggtgtagt |
9175338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 37501524 - 37501428
Alignment:
| Q |
123 |
aatgagacaataccatccctccgagataagagccggtgatatgtactttttgttttgtattctccgtttaaattgtctatccacacccaagtgtcag |
219 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||| ||||| |||||||||| |||||| ||| |||||||| || |||||||||||||||||| |
|
|
| T |
37501524 |
aatgagacaatatcatccctccaagataagagccaatgatacacactttttgttgtgtattttccatttaaattatcgttccacacccaagtgtcag |
37501428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 33928410 - 33928352
Alignment:
| Q |
105 |
atccaatcctatttctctaatgagacaataccatccctccgagataagagccggtgata |
163 |
Q |
| |
|
||||||| | |||||||||||||||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
33928410 |
atccaattccatttctctaatgagacaatatcatccctccaagataagagccagtgata |
33928352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 32926076 - 32926175
Alignment:
| Q |
105 |
atccaatcctatttctctaatgagacaataccatccctccgagataagagccggtgatatgtactttttgttttgtattctccgtttaaattgtctatcc |
204 |
Q |
| |
|
||||||| | ||||||| |||||||||||| ||||||||||||||||||||| ||||| | |||||||| | ||||||||||||||||||||||| ||| |
|
|
| T |
32926076 |
atccaattccatttctccaatgagacaatatcatccctccgagataagagccagtgat-cgcactttttgctgtgtattctccgtttaaattgtctttcc |
32926174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 10405902 - 10405806
Alignment:
| Q |
125 |
tgagacaataccatccctccgagataagagccggtgatatgtactttttgttttgtattctccgtttaaattgtctatccacacccaagtgtcagca |
221 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| | |||| ||||||||| |||||||||| |||||||| ||| |||||||||||||||||||| |
|
|
| T |
10405902 |
tgagacaataacatgcctccgagataagagccagcgatacacactttttgtcgtgtattctccatttaaattatctttccacacccaagtgtcagca |
10405806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 42347495 - 42347564
Alignment:
| Q |
155 |
ccggtgatatgtactttttgttttgtattctccgtttaaattgtctatccacacccaagtgtcagcaatt |
224 |
Q |
| |
|
|||||| |||| | |||||| | |||||||||| |||||||||||| ||||||| ||| ||||| ||||| |
|
|
| T |
42347495 |
ccggtgttatgcattttttggtgtgtattctccatttaaattgtctttccacactcaaatgtcatcaatt |
42347564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University