View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10097_low_3 (Length: 399)
Name: NF10097_low_3
Description: NF10097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10097_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 35 - 387
Target Start/End: Original strand, 9194206 - 9194558
Alignment:
| Q |
35 |
tcatcccataaatccttaatcttaaggcataaatgatcgggagagatattttgttccacattaataagaggatgcttgatgattcaaggatggaaccaca |
134 |
Q |
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| T |
9194206 |
tcatcccataagtccttaatcttaaggcataaatgatcgggagagatattttgttccacattaataagaggatgcttgacgatccaaggatggaaccaca |
9194305 |
T |
|
| Q |
135 |
tatttgtatctccatctccaaaaaatttggtgaaaccatcttttaacacatcaagagacttgaggattgcattccaaataggtgaacagtccttgctttt |
234 |
Q |
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|||||||||||||||| ||| || || ||||||||||||||| | |||||||||||||||||||||||||||||| || |||| ||||||| ||| |
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| T |
9194306 |
tatttgtatctccatcaacaattttttaggcgaaaccatcttttaaaatatcaagagacttgaggattgcattccaaattggcgaaccgtccttgatttg |
9194405 |
T |
|
| Q |
235 |
tatataaatatattacactcttttaagtatttatcggcaaggatagacacccataattttgtgtctgattgcttaagactccaaacaagttttcccaaca |
334 |
Q |
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|||||||| || |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9194406 |
tatataaacattttaccctcttttaagtatttattggcaaggatagacacccataattttgtgtctgattgcttaagacaacaaacaagttttcccaaca |
9194505 |
T |
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| Q |
335 |
aagttgtgttttgttatcgagctggctgaaatcctacacctccaagcttccta |
387 |
Q |
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| T |
9194506 |
aagttgtgttttgttatcatgctggctgaaatcctagacctccaagcttccta |
9194558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 46 - 387
Target Start/End: Complemental strand, 37501321 - 37500980
Alignment:
| Q |
46 |
atccttaatcttaaggcataaatgatcgggagagatattttgtt-ccacattaataagaggatgcttgatgattcaaggatggaaccacatatttgtatc |
144 |
Q |
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| T |
37501321 |
atccttaattttgaggcataaatgacgtggagatatattttgttaccacgctaataagaggatgtttgacgatccaaggatggatccacatatttgtatc |
37501222 |
T |
|
| Q |
145 |
tccatctccaaaaaatttggtgaaaccatcttttaacacatcaagagacttgaggattgcattccaaataggtgaaca-gtccttgctttttatataaat |
243 |
Q |
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||||||||| | || ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| || ||||||||| || ||| |
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| T |
37501221 |
tccatctccgttttgta-ggagaaaccatcttctaacacataaagagttttgaggattgcattccaaataggtgaacctgtttttgctttttctaaaaac |
37501123 |
T |
|
| Q |
244 |
atattacactcttttaagtatttatcggcaaggatagacacccataattttgtgtctgattgcttaagactccaaacaagttttcccaacaaagttgtgt |
343 |
Q |
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| T |
37501122 |
atattcccct-tttcaagtatttatcagcaaggatagacacccataacttcttgtctgattgcacgaaactccaaacaagttttcccaacaaagttgtgt |
37501024 |
T |
|
| Q |
344 |
tttgttatcgagctggctgaaatcctacacctccaagcttccta |
387 |
Q |
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| T |
37501023 |
tttgtagtcgagttggatgaactcctagacctccaagcttccta |
37500980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 279
Target Start/End: Complemental strand, 8989506 - 8989260
Alignment:
| Q |
35 |
tcatcccataaatccttaatcttaaggcataaatgatcgggagagatattttgttccacattaataagaggatgcttgatgattc-aaggatggaaccac |
133 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||| | ||||||||| || |||||||||||||| ||||| | ||| ||||||||| |||| |
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| T |
8989506 |
tcatcccataaatccttaatcttaaggcataaatgatttggaaatatattttgtatcatattaataagaggatacttgacggttcaaaggatggagccac |
8989407 |
T |
|
| Q |
134 |
atatttgtatctccatctccaaaaaatttggtgaaaccatcttttaacacatcaagagacttgaggattgcattccaaataggtgaaca-gtccttgctt |
232 |
Q |
| |
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||| |||||||| ||||||||| | || | ||||||| | ||| ||||| ||| |||| ||||| || || ||||||| |||| ||| |||||| |
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| T |
8989406 |
ataattgtatcttcatctccaattttgtaggcggaaccatcatcaaacgcatcacgagttttgatgattgaatacctaataggtaaacatgtctttgctt |
8989307 |
T |
|
| Q |
233 |
tttatataaatatattacactcttttaagtatttatcggcaaggata |
279 |
Q |
| |
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||| | ||||||||||| |||||| ||||||||||||||||||||| |
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| T |
8989306 |
tttctgaaaatatattaccctctttcaagtatttatcggcaaggata |
8989260 |
T |
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