View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10097_low_5 (Length: 333)
Name: NF10097_low_5
Description: NF10097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10097_low_5 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 39670415 - 39670136
Alignment:
| Q |
9 |
gagaagaagagatgcgaagcaagtgaaatagagtacatatgtgttgcaatttatctctaacatgataaagattgatcatcacaatacataatggttgaat |
108 |
Q |
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| T |
39670415 |
gagaagaagagatgcgaagcaagtgaaatagagtacatatgtgttgcaatttatctctaacatgataaagattgatcatcacaatacaaaatggttgaat |
39670316 |
T |
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| Q |
109 |
tgataaaatggcaattttgctgatcattgaggaagatgatttatcattatatttcaaaaaacagtggaagtcatatacttgattcaaagaagattaaagt |
208 |
Q |
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| T |
39670315 |
tgataaaatggcaattttgctgatcattgaggaagatgatttatcattatatttcaaaaaacagtggaagtcatatacttgattcaaagaagattaaagt |
39670216 |
T |
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| Q |
209 |
tttattcatttatttttaaataacaacatagatgttacacatacaccctttatttccgtacacctttgtacacctcatacatta |
292 |
Q |
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| T |
39670215 |
tttattcatttatttttaaataacaac----atgttacacagacatcatttatttccgtacacccttgtacatctcatacatta |
39670136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 26141453 - 26141506
Alignment:
| Q |
240 |
atgttacacatacaccctttatttccgtacacctttgtacacctcatacattag |
293 |
Q |
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| T |
26141453 |
atgttacatagacaccctttatttccatacactcttgtacaccccatacattag |
26141506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 31110684 - 31110737
Alignment:
| Q |
240 |
atgttacacatacaccctttatttccgtacacctttgtacacctcatacattag |
293 |
Q |
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| T |
31110684 |
atgttacatagacatcctttatttccatacacctttgtacaccccatacattag |
31110737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 17280 - 17237
Alignment:
| Q |
240 |
atgttacacatacaccctttatttccgtacacctttgtacacct |
283 |
Q |
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| T |
17280 |
atgttacatagacaccctttatttccatacacctttgtacacct |
17237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 3440156 - 3440114
Alignment:
| Q |
240 |
atgttacacatacaccctttatttccgtacacctttgtacacc |
282 |
Q |
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| T |
3440156 |
atgttacatagacaccctttatttccatacacctttgtacacc |
3440114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 40613825 - 40613877
Alignment:
| Q |
240 |
atgttacacatacaccctttatttccgtacacctttgtacacctcatacatta |
292 |
Q |
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| T |
40613825 |
atgttacatagacaccctttattcccatacacccttgtacaccccatacatta |
40613877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 42710221 - 42710270
Alignment:
| Q |
244 |
tacacatacaccctttatttccgtacacctttgtacacctcatacattag |
293 |
Q |
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| T |
42710221 |
tacacagacaccctttattcccatacacccttgtacaccccatacattag |
42710270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 43414504 - 43414557
Alignment:
| Q |
240 |
atgttacacatacaccctttatttccgtacacctttgtacacctcatacattag |
293 |
Q |
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| T |
43414504 |
atgttacatagacaccctttattgccatacacccttgtacaccccatacattag |
43414557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 12311081 - 12311041
Alignment:
| Q |
240 |
atgttacacatacaccctttatttccgtacacctttgtaca |
280 |
Q |
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| T |
12311081 |
atgttacatagacaccctttatttccatacacctttgtaca |
12311041 |
T |
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