View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10097_low_6 (Length: 291)
Name: NF10097_low_6
Description: NF10097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10097_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 10560551 - 10560270
Alignment:
| Q |
1 |
catcaaccacaaatacaatgaagtataaaccaaatcataattcaaagctttgactgttccacagagtgaaatatggcaattttaataaggtaacaaccaa |
100 |
Q |
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| T |
10560551 |
catcaaccacaaatataatgaagtataaaccaaatcataattcaaagctttgactgttccacagagtgaaatatggcaacattaataaggtaacaaccaa |
10560452 |
T |
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| Q |
101 |
tatgtgtgagccgagaaagtcttaacataattgaaatgaaatcctaacgcctgcggttcagacctacagatttataaccctgagctcatacaaaatttca |
200 |
Q |
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| T |
10560451 |
tatgtgtgagccgagaaagtcttaacataattgaaatgaaatcctaacgcctgcggttcagacctacagatttataaccctgagctcatacaaaatttca |
10560352 |
T |
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| Q |
201 |
tccatttgaaacactgcaggaagtgtttcaatcagaacagcggcgctatgcttcctcttttagtgcctgccaacttctctgc |
282 |
Q |
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| T |
10560351 |
tccatttgaaacactgcaggaagtgtttcaatcagaacagcggctctatgcttcctcttttagtgcctgccaacttctctgc |
10560270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 10558273 - 10558170
Alignment:
| Q |
180 |
ctgagctcatacaaaatttcatccatttgaaacactgcaggaagtgtttcaatcagaacagcggcgc-tatgcttcctcttttagtgcctgccaacttct |
278 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||| | |||||||||||||| | |||||| || ||||| |
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| T |
10558273 |
ctgagctcatacagaatttcatccatttgaaacactgcaggaagtgtttcaatcaaaactgtggctcttatgcttcctctttcaatgcctgtcatcttct |
10558174 |
T |
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| Q |
279 |
ctgc |
282 |
Q |
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|||| |
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| T |
10558173 |
ctgc |
10558170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 10559564 - 10559509
Alignment:
| Q |
15 |
acaatgaagtataaaccaaatcataattcaaagctttgactgttccacagagtgaa |
70 |
Q |
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|||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||| |
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| T |
10559564 |
acaatgaagtatgaaccaaatcaaaattcaaagctttgacagttccacagggtgaa |
10559509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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