View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10097_low_7 (Length: 250)

Name: NF10097_low_7
Description: NF10097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10097_low_7
NF10097_low_7
[»] chr6 (14 HSPs)
chr6 (113-240)||(4254443-4254570)
chr6 (1-56)||(4254627-4254682)
chr6 (144-234)||(34187630-34187721)
chr6 (113-211)||(6197945-6198044)
chr6 (119-225)||(30465338-30465445)
chr6 (128-234)||(3807213-3807321)
chr6 (128-225)||(4408915-4409013)
chr6 (126-225)||(17957178-17957278)
chr6 (7-50)||(4257937-4257980)
chr6 (115-225)||(10313444-10313555)
chr6 (185-236)||(5644601-5644653)
chr6 (126-211)||(24672416-24672502)
chr6 (186-239)||(11458643-11458696)
chr6 (186-237)||(843984-844036)
[»] chr2 (8 HSPs)
chr2 (144-237)||(8794739-8794832)
chr2 (144-235)||(27694423-27694516)
chr2 (117-239)||(24490454-24490577)
chr2 (126-225)||(30640945-30641044)
chr2 (113-211)||(31994657-31994756)
chr2 (126-174)||(39293083-39293131)
chr2 (131-214)||(34904164-34904247)
chr2 (133-210)||(29242495-29242573)
[»] chr8 (9 HSPs)
chr8 (113-236)||(10467391-10467516)
chr8 (113-238)||(26938772-26938899)
chr8 (128-225)||(16483918-16484016)
chr8 (115-234)||(42023896-42024017)
chr8 (113-234)||(39344718-39344841)
chr8 (126-181)||(32797081-32797136)
chr8 (126-210)||(12597002-12597087)
chr8 (186-239)||(26938533-26938587)
chr8 (127-235)||(35054939-35055049)
[»] chr7 (12 HSPs)
chr7 (117-236)||(13009272-13009393)
chr7 (126-239)||(27567569-27567684)
chr7 (126-223)||(28098679-28098777)
chr7 (132-225)||(22485092-22485185)
chr7 (126-225)||(30851817-30851917)
chr7 (117-233)||(11297898-11298014)
chr7 (126-225)||(20132202-20132302)
chr7 (155-233)||(30851547-30851627)
chr7 (130-236)||(34471378-34471486)
chr7 (186-233)||(25411457-25411505)
chr7 (126-214)||(28564981-28565069)
chr7 (127-195)||(33991965-33992033)
[»] chr4 (7 HSPs)
chr4 (127-239)||(40391038-40391152)
chr4 (126-236)||(15025924-15026036)
chr4 (115-237)||(38377932-38378055)
chr4 (126-172)||(10574082-10574128)
chr4 (185-234)||(31049885-31049935)
chr4 (162-210)||(6449606-6449655)
chr4 (162-236)||(48282889-48282965)
[»] scaffold0233 (1 HSPs)
scaffold0233 (126-238)||(16830-16943)
[»] chr3 (9 HSPs)
chr3 (117-238)||(39340908-39341032)
chr3 (117-214)||(44446783-44446881)
chr3 (130-236)||(34359483-34359592)
chr3 (127-237)||(20315035-20315147)
chr3 (117-180)||(28769472-28769535)
chr3 (131-235)||(54783217-54783322)
chr3 (113-175)||(41544536-41544598)
chr3 (189-238)||(44648251-44648301)
chr3 (126-235)||(50334542-50334653)
[»] chr5 (13 HSPs)
chr5 (126-215)||(19343700-19343790)
chr5 (113-237)||(38948658-38948783)
chr5 (117-235)||(5459047-5459167)
chr5 (117-180)||(26724251-26724314)
chr5 (117-213)||(16089824-16089921)
chr5 (162-237)||(22860871-22860948)
chr5 (131-233)||(1298845-1298951)
chr5 (119-235)||(3746826-3746943)
chr5 (152-236)||(35270847-35270932)
chr5 (128-235)||(39057091-39057200)
chr5 (130-237)||(15070070-15070180)
chr5 (162-238)||(35529755-35529832)
chr5 (126-176)||(36235902-36235952)
[»] chr1 (5 HSPs)
chr1 (126-225)||(16545330-16545430)
chr1 (127-237)||(33752867-33752979)
chr1 (135-238)||(23230789-23230894)
chr1 (130-211)||(3891594-3891676)
chr1 (126-234)||(29307512-29307622)
[»] scaffold0020 (1 HSPs)
scaffold0020 (130-236)||(152078-152186)
[»] scaffold0005 (1 HSPs)
scaffold0005 (117-211)||(253680-253775)
[»] scaffold0720 (1 HSPs)
scaffold0720 (144-225)||(7414-7495)


Alignment Details
Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 4254570 - 4254443
Alignment:
Q  113 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  4254570 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaataaggattaaaagtaaataaaattttgtgaagactaaacttaaaagcttgtaatttta 4254471  T
Q  213 tatggactaaaaaatatttaaccctatg 240  Q
    || ||| |||||||||||||||||||||    
T  4254470 tacggattaaaaaatatttaaccctatg 4254443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4254682 - 4254627
Alignment:
Q  1 acttacatactacatactggaacaatatttcactcttagactatggtttagtcctc 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4254682 acttacatactacatactggaacaatatttcactcttagactatggtttagtcctc 4254627  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 34187630 - 34187721
Alignment:
Q  144 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 234  Q
    ||||||| |||||||||| ||||| |||||||| |||||| ||||||||||| |||  |||||||||| || |||||||||| |||||||||    
T  34187630 taaaatgcaaatagggatgaaaagagaataaaaatttgtggagactaaacttaaaaatttgtaattttgtagggactaaaaacatatttaac 34187721  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 6197945 - 6198044
Alignment:
Q  113 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaatttt 211  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||| |||  ||||||||||||| |||| ||   ||||||||||||| ||||||||||||    
T  6197945 ggacacttttattcctccaaaatagtccctataaaatgtaaataaggaccaaaagtgaataaacttttcgtagggactaaacttgaaggcttgtaatttt 6198044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 30465445 - 30465338
Alignment:
Q  119 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatgg 217  Q
    |||||| |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| ||    
T  30465445 ttttaatcctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataagg 30465346  T
Q  218 actaaaaa 225  Q
    ||||||||    
T  30465345 actaaaaa 30465338  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 3807213 - 3807321
Alignment:
Q  128 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag--actaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    ||||||||||||||| ||||||||||| | |||  ||||||||||||| |||| || ||  |||||||||||||| |||||||||| || | ||||||||    
T  3807213 tccaaaatagtccttataaaatgaaaacaaggaccaaaagtgaataaactttt-tgtaggaactaaacttgaaagtttgtaattttttaggaactaaaaa 3807311  T
Q  226 -atatttaac 234  Q
     |||||||||    
T  3807312 catatttaac 3807321  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 4409013 - 4408915
Alignment:
Q  128 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    ||||||||||||| | ||||||| ||||||| | ||||||||||| |||||||||| | || ||||||| |||| ||||||||||| |  |||||||||    
T  4409013 tccaaaatagtccctataaaatgtaaataggaactaaaagtgaataaaaattttgtaaggattaaacttaaaagtttgtaattttacagagactaaaaa 4408915  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 17957178 - 17957278
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 224  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||| | | |||||||  |||||||||||||||||||| | |||||||    
T  17957178 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttataaggactaaatgtgaaagcttgtaattttataagaactaaaa 17957277  T
Q  225 a 225  Q
    |    
T  17957278 a 17957278  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 4257980 - 4257937
Alignment:
Q  7 atactacatactggaacaatatttcactcttagactatggttta 50  Q
    ||||||||||||| |||||||||| |||||||||||||||||||    
T  4257980 atactacatactgcaacaatattttactcttagactatggttta 4257937  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 10313444 - 10313555
Alignment:
Q  115 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattt-tgtgaagactaaacttgaaagcttgtaattttat 213  Q
    |||||||||  ||||||||||||||| | ||||||| ||||| ||| ||||| | |||||  ||| |||  ||||||||||| ||||||||||||||| |    
T  10313444 acacttttagtcctccaaaatagtccctataaaatgcaaataaggactaaaaataaataatttttctgtagagactaaacttaaaagcttgtaattttgt 10313543  T
Q  214 atggactaaaaa 225  Q
    | | ||||||||    
T  10313544 aagaactaaaaa 10313555  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 5644653 - 5644601
Alignment:
Q  185 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 236  Q
    |||||||||||||||  ||||||||||||| |||||||||| |||||||||||    
T  5644653 agactaaacttgaaaatttgtaattttataaggactaaaaacatatttaaccc 5644601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 24672416 - 24672502
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaatttt 211  Q
    ||||||||||||||| | ||| ||| |||||||||  || ||||||||||| ||||||   ||||||||| ||||| ||||||||||    
T  24672416 cctccaaaatagtccatttaagatgcaaatagggaccaatagtgaataaaatttttgtagggactaaactagaaagtttgtaatttt 24672502  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 11458696 - 11458643
Alignment:
Q  186 gactaaacttgaaagcttgtaattttatatggactaaaaaatatttaaccctat 239  Q
    ||||||||| |||| ||||||||||| || ||||||||| |||||||| |||||    
T  11458696 gactaaactcgaaaacttgtaattttgtagggactaaaatatatttaatcctat 11458643  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 844036 - 843984
Alignment:
Q  186 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 237  Q
    ||||||||||||||| | | | |||||||||||||||||| ||||||||||||    
T  844036 gactaaacttgaaaggtcgcacttttatatggactaaaaacatatttaaccct 843984  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 8794739 - 8794832
Alignment:
Q  144 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 237  Q
    ||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  8794739 taaaatgcaaatagggactaaaagtgaataaaatttt-tgtagactaaacttgaaagcttgcaattttatagggactaaaaacatatttaaccct 8794832  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 27694516 - 27694423
Alignment:
Q  144 taaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacc 235  Q
    |||||||  ||||||||||||||||||||||| |||| ||  ||| |||||||||||  ||||||||||||| |||||||||| ||||||||||    
T  27694516 taaaatgtgaatagggattaaaagtgaataaattttttgtagagattaaacttgaaaatttgtaattttatagggactaaaaacatatttaacc 27694423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 239
Target Start/End: Complemental strand, 24490577 - 24490454
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 216  Q
    |||||||  |||| |||||||||  | ||||||| ||||||||| |||||||||||||  |||| | |  ||||||||| |||||||||||||||| | |    
T  24490577 acttttagtcctctaaaatagtctctataaaatgcaaatagggactaaaagtgaataattttttttaagaactaaacttaaaagcttgtaattttacagg 24490478  T
Q  217 gactaaaaa-atatttaaccctat 239  Q
     ||||||||  |||||||||||||    
T  24490477 aactaaaaacgtatttaaccctat 24490454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 30641044 - 30640945
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  ||    ||| |||||||||||||||| ||||| ||| ||| ||||||    
T  30641044 cctccaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaaacatttccgagattaaacttgaaagcttgaaatttaatagggattaaaaa 30640945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 31994756 - 31994657
Alignment:
Q  113 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 211  Q
    |||||||| ||| ||||||||||||||| | ||||||| |||| |||||||||| ||||||||  ||||||  ||| || |||| |||||||||||||||    
T  31994756 ggacacttgtaatcctccaaaatagtccctataaaatgcaaattgggattaaaaatgaataaattttttgtagagattatacttaaaagcttgtaatttt 31994657  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 39293131 - 39293083
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa 174  Q
    ||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  39293131 cctccaaaatagtccatataaaatgaaaatagggactaaaagtgaataa 39293083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 34904164 - 34904247
Alignment:
Q  131 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttata 214  Q
    |||||||||||| ||||||| ||||||||| |||| |  |||||  |||| ||| | ||||||||||||||||||||||||||||    
T  34904164 aaaatagtccttttaaaatgcaaatagggactaaatgcaaataagttttt-tgatggactaaacttgaaagcttgtaattttata 34904247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 29242573 - 29242495
Alignment:
Q  133 aatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 210  Q
    |||||||| | ||||||| ||||||||  |||||||||||||  |||| || | |||||||||| ||||||||||||||    
T  29242573 aatagtccctataaaatgcaaataggggctaaaagtgaataatttttttgtaaggactaaacttaaaagcttgtaattt 29242495  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 10467516 - 10467391
Alignment:
Q  113 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 211  Q
    |||||||||||  ||||||||||||||| | ||||||| ||||||||| ||||| ||||||||  |||||| | ||||||||||||||||||||||||||    
T  10467516 ggacacttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaaatgaataaattttttgtaaggactaaacttgaaagcttgtaatttt 10467417  T
Q  212 atatggac-taaaaaatatttaaccc 236  Q
     || |||| ||||| |||||||||||    
T  10467416 ttagggacttaaaatatatttaaccc 10467391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 238
Target Start/End: Complemental strand, 26938899 - 26938772
Alignment:
Q  113 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 211  Q
    |||||||||||  ||| ||||||||||| | ||||||| ||||||||| ||||||||||||||  ||||||   |||||||| | |||||||||||||||    
T  26938899 ggacacttttagtccttcaaaatagtccctttaaaatgcaaatagggactaaaagtgaataaattttttgtagggactaaacataaaagcttgtaatttt 26938800  T
Q  212 atatggactaaaaa-atatttaacccta 238  Q
     || |||||||||| |||||||||||||    
T  26938799 gtagggactaaaaacatatttaacccta 26938772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 16483918 - 16484016
Alignment:
Q  128 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    ||||||||||||  ||||||||| ||||||| | |||||||||||| ||||||   ||| ||||||||||||| |||||||||||||| ||||||||||    
T  16483918 tccaaaatagtctctgtaaaatgcaaataggaactaaaagtgaatacaatttttataaggactaaacttgaaaacttgtaattttatagggactaaaaa 16484016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 42024017 - 42023896
Alignment:
Q  115 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttat 213  Q
    |||||||||  ||||||||||||||| | ||||| | ||||||||| ||||| |||||||||||||   | | |||||||||||||| |||||||||| |    
T  42024017 acacttttagtcctccaaaatagtccatataaaaagcaaatagggactaaaaatgaataaaatttttgtatgtactaaacttgaaagtttgtaattttgt 42023918  T
Q  214 atggactaaaaa-atatttaac 234  Q
    | |||||||||| |||||||||    
T  42023917 agggactaaaaacatatttaac 42023896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 234
Target Start/End: Original strand, 39344718 - 39344841
Alignment:
Q  113 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaatttt 211  Q
    |||||||||||  ||||||||||||||  | ||||||| ||||||||| ||||||||||||||  |||| |  |||| |||||| |||||||||||||||    
T  39344718 ggacacttttagtcctccaaaatagtctctataaaatgtaaatagggactaaaagtgaataaattttttctagagaccaaacttaaaagcttgtaatttt 39344817  T
Q  212 atatggactaaaaa-atatttaac 234  Q
      | |||||||||| |||||||||    
T  39344818 gcagggactaaaaacatatttaac 39344841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 32797081 - 32797136
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttg 181  Q
    ||||||||||||||||| ||||||| || |||||| ||||||||||||||||||||    
T  32797081 cctccaaaatagtccttataaaatgcaattagggactaaaagtgaataaaattttg 32797136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 12597002 - 12597087
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattt 210  Q
    ||||||||||||||| | ||||||| ||||||||| |||| |||||| |||| |||||   ||||| |||||||||||||||||||    
T  12597002 cctccaaaatagtccctataaaatgcaaatagggactaaacgtgaataaaaaatttgtagggactatacttgaaagcttgtaattt 12597087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 26938587 - 26938533
Alignment:
Q  186 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccctat 239  Q
    |||||||||| ||||||||||||||| || |||||||||| ||||||||||||||    
T  26938587 gactaaacttaaaagcttgtaattttgtagggactaaaaacatatttaaccctat 26938533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 35055049 - 35054939
Alignment:
Q  127 ctccaaaatagtccttgtaaaa-tgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggact-aaaa 224  Q
    |||||||||||||| | ||||| || || || ||| ||||| |||||||| ||||||    ||||||||||||| ||||||||||| || ||||| ||||    
T  35055049 ctccaaaatagtccctataaaaatgcaattaaggactaaaaatgaataaatttttgtaggaactaaacttgaaaacttgtaattttgtaaggactgaaaa 35054950  T
Q  225 aatatttaacc 235  Q
     ||||||||||    
T  35054949 catatttaacc 35054939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 13009393 - 13009272
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatat 215  Q
    |||||||  |||||||| |||||| ||||||||| |||||| ||||||  |||||||||| ||||||   |||||||||||||||||||||||||||||     
T  13009393 acttttagtcctccaaattagtccctgtaaaatgtaaatagagattaattgtgaataaaacttttgtagggactaaacttgaaagcttgtaattttatag 13009294  T
Q  216 ggactaaaaa-atatttaaccc 236  Q
    |||||||||| |||||||||||    
T  13009293 ggactaaaaatatatttaaccc 13009272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 27567684 - 27567569
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 224  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||| |||| |||| |   |||||||||||||| ||||||||||| || ||  |||||    
T  27567684 cctccaaaatagtccttataaaatgcaaatatggattaaaagtgaagaaaacttttttagggactaaacttgaaaacttgtaattttgtaggggttaaaa 27567585  T
Q  225 a-atatttaaccctat 239  Q
    | ||||||||||||||    
T  27567584 acatatttaaccctat 27567569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 223
Target Start/End: Original strand, 28098679 - 28098777
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa 223  Q
    ||||||||||||||| | ||||||| ||||||||| ||||||| |||||   |||||| || ||||||||| ||| |||||||||||||| | ||||||    
T  28098679 cctccaaaatagtccctataaaatgcaaatagggactaaaagtaaataatttttttgtaaaaactaaacttaaaaccttgtaattttataggaactaaa 28098777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 22485185 - 22485092
Alignment:
Q  132 aaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    ||||||||||| ||||||| ||||||||| ||||||| ||||||| |||||   |||||||||| | |||| ||||||||  | ||||||||||    
T  22485185 aaatagtccttataaaatgcaaatagggactaaaagtaaataaaaatttgtacggactaaacttaagagctggtaattttggagggactaaaaa 22485092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 30851917 - 30851817
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtga-agactaaacttgaaagcttgtaattttatatggactaaaa 224  Q
    |||||||||||||   | ||| ||| || ||||||||| ||||||||||| ||||   | |||||||||||||||| ||||||||||||| |||||||||    
T  30851917 cctccaaaatagtgtctataagatgtaagtagggattagaagtgaataaattttttatagagactaaacttgaaagtttgtaattttataaggactaaaa 30851818  T
Q  225 a 225  Q
    |    
T  30851817 a 30851817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 11297898 - 11298014
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatg 216  Q
    |||||||  ||||||||||||||| | ||||||  |||||||||  ||||||||  ||||  ||  || ||||||||||||||||||||||||| ||| |    
T  11297898 acttttagtcctccaaaatagtccctttaaaatacaaatagggacaaaaagtgataaaaaaattccga-gactaaacttgaaagcttgtaatttaatagg 11297996  T
Q  217 gactaaaaa-atatttaa 233  Q
    || |||||| ||||||||    
T  11297997 gattaaaaacatatttaa 11298014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 20132202 - 20132302
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 224  Q
    ||||||||||||||| | ||||||  ||||||||| ||||| ||||| |||| ||||| |  ||||||  | |||||||||||||||||| | |||||||    
T  20132202 cctccaaaatagtccctataaaatacaaatagggactaaaaatgaataaaaaatttgtaagaactaaatgtcaaagcttgtaattttataggaactaaaa 20132301  T
Q  225 a 225  Q
    |    
T  20132302 a 20132302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 30851627 - 30851547
Alignment:
Q  155 tagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 233  Q
    |||||| ||||||||||||||  |||| |  |||||||||||||||  ||||||||||||| |||||||||| ||||||||    
T  30851627 tagggactaaaagtgaataaatgttttatagagactaaacttgaaaatttgtaattttataaggactaaaaacatatttaa 30851547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 34471378 - 34471486
Alignment:
Q  130 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaata-aaattttgtgaagactaaacttgaaagcttgtaattttatatggacta-aaaaat 227  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||| |  ||||||  ||| ||||||| ||||||| ||||||| || |||||| ||| ||    
T  34471378 caaaatagtctctataaaatgcaaatagggactaaaagtgaatacattttttgtagagattaaactttaaagcttataattttgtaaggactagaaacat 34471477  T
Q  228 atttaaccc 236  Q
    |||||||||    
T  34471478 atttaaccc 34471486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 25411505 - 25411457
Alignment:
Q  186 gactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaa 233  Q
    |||||||||||||||||| |||||||| | |||||||||| ||||||||    
T  25411505 gactaaacttgaaagcttctaattttacagggactaaaaacatatttaa 25411457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 28565069 - 28564981
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 214  Q
    ||||||||||||| | | ||||||  ||||||| ||||||||| ||||||  ||||| ||||||||| || |||  || ||||||||||    
T  28565069 cctccaaaatagttcatataaaatacaaataggaattaaaagtaaataaatctttgtaaagactaaatttaaaaatttataattttata 28564981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 33991965 - 33992033
Alignment:
Q  127 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaactt 195  Q
    |||||||||| ||||| ||||||  ||||||||| |||| ||||||||||  || || |||||||||||    
T  33991965 ctccaaaatattccttataaaatacaaatagggactaaacgtgaataaaaaattttggagactaaactt 33992033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 239
Target Start/End: Original strand, 40391038 - 40391152
Alignment:
Q  127 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    |||||||||||||| | ||||||| ||||||||| ||||||||||| |||| |||||   |||||||||| ||| |||||||||||||| ||||||||||    
T  40391038 ctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaaatttgtagggactaaacttaaaaacttgtaattttatagggactaaaaa 40391137  T
Q  226 -atatttaaccctat 239  Q
     ||||||||||||||    
T  40391138 catatttaaccctat 40391152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 15025924 - 15026036
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 224  Q
    ||||||||||||||||| ||||||  ||||||||| ||||| ||||||||| ||||||   |||||||||| |||| |||||||||| ||  ||||||||    
T  15025924 cctccaaaatagtccttataaaatataaatagggactaaaaatgaataaaatttttgtagggactaaacttaaaagtttgtaattttgtagtgactaaaa 15026023  T
Q  225 a-atatttaaccc 236  Q
    | |||||||||||    
T  15026024 acatatttaaccc 15026036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 38377932 - 38378055
Alignment:
Q  115 acacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttata 214  Q
    |||||||||  ||||||||||||||| | ||||||| ||||||||| |||||||||||||||  || | | ||||||| |||||| ||||| ||||| ||    
T  38377932 acacttttagtcctccaaaatagtccctataaaatgcaaatagggaataaaagtgaataaaaaattttaaggactaaatttgaaaacttgttattttgta 38378031  T
Q  215 tggac-taaaaaatatttaaccct 237  Q
     | || ||||| ||||||||||||    
T  38378032 agaacttaaaacatatttaaccct 38378055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 10574082 - 10574128
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat 172  Q
    ||||||||||||||| ||||||||| ||||||||| |||| ||||||    
T  10574082 cctccaaaatagtccctgtaaaatgcaaatagggactaaaggtgaat 10574128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 31049935 - 31049885
Alignment:
Q  185 agactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaac 234  Q
    |||||||||||||||| |||||||||| || |||||||||| |||||||||    
T  31049935 agactaaacttgaaagtttgtaattttgtaaggactaaaaacatatttaac 31049885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 6449655 - 6449606
Alignment:
Q  162 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattt 210  Q
    |||||||||||||| |||| || | |||||||||||||||||||||||||    
T  6449655 taaaagtgaataaattttttgtaaggactaaacttgaaagcttgtaattt 6449606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 48282889 - 48282965
Alignment:
Q  162 taaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccc 236  Q
    |||||||||||||| |||| ||   |||||||||||||||||| ||||| | || |||||||||| |||||||||||    
T  48282889 taaaagtgaataaattttttgtagggactaaacttgaaagcttttaattgtgtacggactaaaaatatatttaaccc 48282965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 16943 - 16830
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    |||| |||||||||| | ||||||  ||||||||| ||||||||||||||| ||||  | ||||||||||||||| | ||||||||||| ||||||||||    
T  16943 cctctaaaatagtccctataaaatacaaatagggactaaaagtgaataaaaatttggtaggactaaacttgaaagttggtaattttatagggactaaaaa 16844  T
Q  226 -atatttaacccta 238  Q
     |||||||||||||    
T  16843 catatttaacccta 16830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 238
Target Start/End: Original strand, 39340908 - 39341032
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttata 214  Q
    |||||||  |||||||||||||| || ||||||||||||||  | |||||||||||||  |||| || |||  |||||||||||||||||||||||||||    
T  39340908 acttttagtcctccaaaatagtcattataaaatgaaaatagaaagtaaaagtgaataattttttttgtagagactaaacttgaaagcttgtaattttata 39341007  T
Q  215 tggactaaaaa-atatttaacccta 238  Q
     ||| |||||| |||||||||||||    
T  39341008 gggattaaaaacatatttaacccta 39341032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 44446881 - 44446783
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttata 214  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||| ||||||||||| |||||||||| |  ||||||| ||||||||||||||||||||    
T  44446881 acttttagtcctccaaaatagtccctataaaatgcaaatagggactaaaagtgaataaaaattttgtaagaactaaacgtgaaagcttgtaattttata 44446783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 236
Target Start/End: Original strand, 34359483 - 34359592
Alignment:
Q  130 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaa-ttttatatggactaaaaa-a 226  Q
    ||||| ||||| | ||||||| ||||||| ||||||||||||||||| ||||||   |||||||||||||||||||||| ||||||| |||||||||| |    
T  34359483 caaaaaagtccctataaaatgtaaataggaattaaaagtgaataaaatttttgtagggactaaacttgaaagcttgtaatttttatagggactaaaaaca 34359582  T
Q  227 tatttaaccc 236  Q
    ||||||||||    
T  34359583 tatttaaccc 34359592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 237
Target Start/End: Original strand, 20315035 - 20315147
Alignment:
Q  127 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    ||||||||| |||| | ||||||| ||||||||| ||||||||||||||  |||| |  |||||||||||||||| |||||||||| ||  |||||||||    
T  20315035 ctccaaaattgtccctataaaatgtaaatagggactaaaagtgaataaattttttatagagactaaacttgaaagtttgtaattttgtagtgactaaaaa 20315134  T
Q  226 -atatttaaccct 237  Q
     ||||||||||||    
T  20315135 catatttaaccct 20315147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 28769535 - 28769472
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 180  Q
    |||||||| ||||||||||||||||| ||||||| ||||| ||| |||||||||||||| ||||    
T  28769535 acttttaatcctccaaaatagtccttataaaatgcaaataaggactaaaagtgaataaattttt 28769472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 54783217 - 54783322
Alignment:
Q  131 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atat 229  Q
    |||||||||| ||||||||  ||||| ||||||||||  ||| |||  |||| | ||||| |||| ||||||||||||||| || |||||||||| ||||    
T  54783217 aaaatagtccctgtaaaattcaaataaggattaaaagcaaattaaaaattgtaaggactacacttaaaagcttgtaattttgtaaggactaaaaacatat 54783316  T
Q  230 ttaacc 235  Q
    ||||||    
T  54783317 ttaacc 54783322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 41544598 - 41544536
Alignment:
Q  113 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa 175  Q
    |||||||||||| | ||||||||||| | ||||||||| | ||||||| ||||||||||||||    
T  41544598 ggacacttttaatcttccaaaatagttcctgtaaaatgcatatagggactaaaagtgaataaa 41544536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 44648251 - 44648301
Alignment:
Q  189 taaacttgaaagcttgtaattttatatggact-aaaaaatatttaacccta 238  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||||||    
T  44648251 taaacttgaaagtttgtaattttatagggactaaaaaaatatttaacccta 44648301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 235
Target Start/End: Complemental strand, 50334653 - 50334542
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaa 224  Q
    |||| |||||||||| | ||||||| ||||||| | ||||||||||||||  ||||||   ||||||| |||||| ||| |||||||| | ||| |||||    
T  50334653 cctctaaaatagtccctataaaatgcaaataggaactaaaagtgaataaattttttgtagggactaaatttgaaaacttataattttagaaggattaaaa 50334554  T
Q  225 a-atatttaacc 235  Q
    | ||||||||||    
T  50334553 acatatttaacc 50334542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 19343700 - 19343790
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaaga--ctaaacttgaaagcttgtaattttatat 215  Q
    |||||||| |||||||| ||||||| ||||||||| |||||||||||||| |||| || ||   ||||||||||||||||||||||||||||    
T  19343700 cctccaaactagtccttataaaatgcaaatagggactaaaagtgaataaattttt-tgcagggcctaaacttgaaagcttgtaattttatat 19343790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 38948658 - 38948783
Alignment:
Q  113 ggacacttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaatttta 212  Q
    |||||||||||  || || ||||||||| | ||||||  |||||||||  ||||||||||||  ||||||  ||||||||||||||| |||||||||||     
T  38948658 ggacacttttagtccacccaaatagtccctataaaattcaaatagggaccaaaagtgaataatgttttgtatagactaaacttgaaaacttgtaattttg 38948757  T
Q  213 tatggactaaaaa-atatttaaccct 237  Q
    ||   |||||||| ||||||||||||    
T  38948758 tagaaactaaaaacatatttaaccct 38948783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 5459167 - 5459047
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatat 215  Q
    |||||||  ||||||||||||||| | ||||||| ||||||||||||||| ||||| ||||  ||||   |||||||||| ||| ||| ||||||||||     
T  5459167 acttttattcctccaaaatagtccctataaaatgcaaatagggattaaaaatgaataaaaaaattgtagggactaaacttaaaaacttataattttatag 5459068  T
Q  216 ggactaaaaa-atatttaacc 235  Q
     ||||||||| ||||||||||    
T  5459067 agactaaaaacatatttaacc 5459047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 26724251 - 26724314
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt 180  Q
    |||||||  ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||    
T  26724251 acttttagtcctccaaaatagtccttataaaatgaaaatagagactaaaagtgaataaattttt 26724314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 213
Target Start/End: Original strand, 16089824 - 16089921
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttat 213  Q
    |||||||  |||| |||||||||| | ||||||| ||||| ||| ||||||||||| |||| ||||| | |||||||| |||||| ||||||||||||    
T  16089824 acttttagtcctctaaaatagtccctataaaatgcaaatatggactaaaagtgaataaaaaatttgtaaggactaaacgtgaaagtttgtaattttat 16089921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 22860948 - 22860871
Alignment:
Q  162 taaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atatttaaccct 237  Q
    ||||||||||||||| |||||| || ||||||||| ||||||||||||||| || |||||||||| | ||||||||||    
T  22860948 taaaagtgaataaaagttttgtaaaaactaaactttaaagcttgtaattttgtagggactaaaaacacatttaaccct 22860871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 1298845 - 1298951
Alignment:
Q  131 aaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa---attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-a 226  Q
    |||||||||| | ||||||| ||||||||| ||||||||||||||    ||||||   ||||||| || ||||||||||||||| || |||||||||| |    
T  1298845 aaaatagtccctataaaatgcaaatagggactaaaagtgaataaattttttttgtagggactaaatttaaaagcttgtaattttgtagggactaaaaaca 1298944  T
Q  227 tatttaa 233  Q
    |||||||    
T  1298945 tatttaa 1298951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 3746826 - 3746943
Alignment:
Q  119 ttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatgga 218  Q
    |||||| ||||||||| ||||| | ||||||| |||||  ||||| ||||||||||| ||||||  ||||||||||| ||   || ||| ||| |||| |    
T  3746826 ttttaatcctccaaaacagtccctataaaatgtaaatatagattataagtgaataaatttttgtagagactaaacttaaatagttataactttgtatgaa 3746925  T
Q  219 ctaaaaa-atatttaacc 235  Q
    ||||||| ||||||||||    
T  3746926 ctaaaaacatatttaacc 3746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 35270847 - 35270932
Alignment:
Q  152 aaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaa-aaatatttaaccc 236  Q
    |||||||||||||||||||||||| |||| |   ||||||||||||||| || ||||||| || | |||||| | |||||||||||    
T  35270847 aaatagggattaaaagtgaataaatttttatagggactaaacttgaaagtttttaattttgtaggaactaaagacatatttaaccc 35270932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 39057200 - 39057091
Alignment:
Q  128 tccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaa-attttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa- 225  Q
    |||||||||||||   ||||||| ||||| ||||||||||||||||||  ||||||  |||| |||||| |||  |||||||||| ||  |||||||||     
T  39057200 tccaaaatagtcccaataaaatgtaaataaggattaaaagtgaataaattttttgtagagaccaaacttaaaaatttgtaattttgtagagactaaaaat 39057101  T
Q  226 atatttaacc 235  Q
    ||||||||||    
T  39057100 atatttaacc 39057091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 237
Target Start/End: Original strand, 15070070 - 15070180
Alignment:
Q  130 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaattttgtgaa--gactaaacttgaaagcttgtaattttatatggactaaaaa-a 226  Q
    ||||||||||  | ||||||| ||||||||| |||||||||||||| |||| || |  |||||||||| |||  |||||||||| ||  ||||||||| |    
T  15070070 caaaatagtctctataaaatgtaaatagggactaaaagtgaataaatttttttgtagggactaaacttaaaaatttgtaattttttagagactaaaaata 15070169  T
Q  227 tatttaaccct 237  Q
    |||||| ||||    
T  15070170 tatttatccct 15070180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 35529755 - 35529832
Alignment:
Q  162 taaaagtgaataaaattttgtgaag-actaaacttgaaagcttgtaattttatatggactaaaaa-atatttaacccta 238  Q
    ||||||||||||||||||| ||| | |||||||||||||  | || |||||||| |||||||||| |||||||||||||    
T  35529755 taaaagtgaataaaatttt-tgagggactaaacttgaaacgtcgtgattttatagggactaaaaacatatttaacccta 35529832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 36235902 - 36235952
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa 176  Q
    ||||||||||||||||| ||||||| ||||| ||| ||||| |||||||||    
T  36235902 cctccaaaatagtccttataaaatgcaaataaggactaaaaatgaataaaa 36235952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 16545430 - 16545330
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatttt-gtgaagactaaacttgaaagcttgtaattttatatggactaaaa 224  Q
    |||||||||||||||||  |||||| |||| || | |||||||||||||| |||| ||  ||||||||||| ||| |||||||||||||| |||||||||    
T  16545430 cctccaaaatagtccttacaaaatgcaaattggtagtaaaagtgaataaattttttgtacagactaaacttaaaaacttgtaattttatagggactaaaa 16545331  T
Q  225 a 225  Q
    |    
T  16545330 a 16545330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 237
Target Start/End: Complemental strand, 33752979 - 33752867
Alignment:
Q  127 ctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaatt-ttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    |||||||||||||| | ||||||| ||||| ||| |||||||||||||||   ||||   || |||||| ||||||||||||||||||| ||||||||||    
T  33752979 ctccaaaatagtccctataaaatgtaaataaggactaaaagtgaataaaaaaattgtagggattaaactggaaagcttgtaattttatagggactaaaaa 33752880  T
Q  226 -atatttaaccct 237  Q
     ||||||||||||    
T  33752879 catatttaaccct 33752867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 23230894 - 23230789
Alignment:
Q  135 tagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-atattta 232  Q
    |||||||| ||||||| | |||| || ||||||||||| ||||||||||   ||||||||||| ||  |||||||||| ||  ||||||||| |||||||    
T  23230894 tagtccttataaaatgtatatagtgactaaaagtgaataaaaattttgtagggactaaacttgtaaatttgtaattttgtagagactaaaaacatattta 23230795  T
Q  233 acccta 238  Q
    ||||||    
T  23230794 acccta 23230789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 3891594 - 3891676
Alignment:
Q  130 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaat-tttgtgaagactaaacttgaaagcttgtaatttt 211  Q
    ||||||||||  | ||||||  ||||||||||||||||| ||||||||  ||||  ||| ||||||||||| |||||||||||    
T  3891594 caaaatagtctctataaaatacaaatagggattaaaagtaaataaaataattgtagagattaaacttgaaaacttgtaatttt 3891676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 234
Target Start/End: Complemental strand, 29307622 - 29307512
Alignment:
Q  126 cctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaat-aaaattttgtgaagactaaacttgaaagcttgtaattttatatggac-taaa 223  Q
    ||||||||||||||| | ||||||| ||||||||| ||| ||| ||| |||| |||||   ||||||||||  ||  ||||||||||||| |||| ||||    
T  29307622 cctccaaaatagtccctataaaatgcaaatagggactaagagttaataaaaaatttgtagggactaaacttttaaaattgtaattttatagggacttaaa 29307523  T
Q  224 aaatatttaac 234  Q
    | |||||||||    
T  29307522 acatatttaac 29307512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 236
Target Start/End: Complemental strand, 152186 - 152078
Alignment:
Q  130 caaaatagtccttgtaaaatgaaaatagggattaaaagtgaataaaa-ttttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa-at 227  Q
    ||||||||||  | ||||||| ||||| ||| ||||||||| ||||| |||||| ||||||||||||| |||| | ||||||| || |||||||||| ||    
T  152186 caaaatagtctctataaaatgcaaataaggactaaaagtgagtaaaacttttgtaaagactaaacttgtaagcctataattttgtagggactaaaaacat 152087  T
Q  228 atttaaccc 236  Q
    |||||||||    
T  152086 atttaaccc 152078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 253775 - 253680
Alignment:
Q  117 acttttaaccctccaaaatagtccttgtaaaatgaaaatagggattaaaagtgaataa-aattttgtgaagactaaacttgaaagcttgtaatttt 211  Q
    |||||||| ||||||||||||||| | ||||||| | |||| |||||||| |||||||   ||||||  |||||||| || |||||||||||||||    
T  253775 acttttaatcctccaaaatagtccctataaaatgcagatagagattaaaaatgaataatttttttgtagagactaaatttaaaagcttgtaatttt 253680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 7495 - 7414
Alignment:
Q  144 taaaatgaaaatagggattaaaagtgaataaaattttgtgaagactaaacttgaaagcttgtaattttatatggactaaaaa 225  Q
    ||||||| ||||||||| ||||| |||||||||  || |  ||| |||||||||||||||||||||| ||| ||| ||||||    
T  7495 taaaatgcaaatagggactaaaaatgaataaaaaattttcgagattaaacttgaaagcttgtaatttaatagggattaaaaa 7414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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