View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10097_low_8 (Length: 250)

Name: NF10097_low_8
Description: NF10097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10097_low_8
NF10097_low_8
[»] chr8 (4 HSPs)
chr8 (1-242)||(27408880-27409122)
chr8 (24-91)||(36426281-36426348)
chr8 (26-79)||(7394850-7394903)
chr8 (24-88)||(11926864-11926928)
[»] chr4 (2 HSPs)
chr4 (25-91)||(37859272-37859338)
chr4 (18-88)||(3579134-3579204)
[»] chr3 (4 HSPs)
chr3 (9-91)||(14155458-14155540)
chr3 (25-87)||(37075180-37075242)
chr3 (35-91)||(8648581-8648637)
chr3 (26-125)||(29584848-29584945)
[»] chr1 (2 HSPs)
chr1 (24-93)||(26733566-26733635)
chr1 (35-88)||(28437661-28437714)
[»] scaffold0027 (1 HSPs)
scaffold0027 (26-90)||(15177-15241)
[»] chr7 (3 HSPs)
chr7 (52-136)||(41903602-41903684)
chr7 (22-86)||(8054394-8054458)
chr7 (22-86)||(8054825-8054889)
[»] chr6 (4 HSPs)
chr6 (38-91)||(8844451-8844504)
chr6 (33-92)||(15400652-15400711)
chr6 (33-92)||(15412439-15412498)
chr6 (33-92)||(15428033-15428092)
[»] chr2 (2 HSPs)
chr2 (24-92)||(13249419-13249487)
chr2 (26-125)||(37003889-37003986)
[»] chr5 (2 HSPs)
chr5 (26-79)||(41790489-41790542)
chr5 (26-125)||(32528687-32528784)
[»] scaffold0062 (1 HSPs)
scaffold0062 (104-136)||(3731-3763)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 27409122 - 27408880
Alignment:
Q  1 aaaattgaaaattttacccatctctaaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtccatgatc-aac 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| |||    
T  27409122 aaaattgaaaattttacccatctctaaaccataacacaaacttttgtctaaggtacaacttatccaaaatactaaaatagtctttggtccatgatcaaac 27409023  T
Q  100 atcgtataagataaaaaattattcaaaatcataaaagnnnnnnnnncctatgttgttttgctttatgctatgtttacattttagcagaacaaacacataa 199  Q
    || ||||||||||||||||||||||| ||||||||||         ||||| ||||||||| ||| ||||||||||| |||||| |||||||||||||||    
T  27409022 attgtataagataaaaaattattcaacatcataaaagtttttttttcctatattgttttgccttaagctatgtttaccttttagtagaacaaacacataa 27408923  T
Q  200 tatatgtttttgtcaaataatctaatgattagaaattcatctc 242  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  27408922 tatatgtttttgtcaagtaatctaatgattagaaattcatctc 27408880  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 36426281 - 36426348
Alignment:
Q  24 ctaaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtcca 91  Q
    |||||||| ||||||  ||||||||| |  ||||| ||||| ||||||| ||||||||||||||||||    
T  36426281 ctaaaccacaacacatctttttgtctcacatacaagttgtctaaaataccaaaatagtcttttgtcca 36426348  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 7394850 - 7394903
Alignment:
Q  26 aaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaata 79  Q
    |||||||||||||| ||||||||| | |||||| ||||| ||||||| ||||||    
T  7394850 aaaccataacacaactttttgtctcacgtacaagttgtctaaaataccaaaata 7394903  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 11926864 - 11926928
Alignment:
Q  24 ctaaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgt 88  Q
    ||||||||||  | || ||||||||| | |||||| ||||| ||||||| |||||||||||||||    
T  11926864 ctaaaccatactataactttttgtctcatgtacaatttgtctaaaataccaaaatagtcttttgt 11926928  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 37859272 - 37859338
Alignment:
Q  25 taaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtcca 91  Q
    ||||||||||||||| ||||||||| || ||||||||||| |||| ||||||||| | |||||||||    
T  37859272 taaaccataacacaactttttgtctcaaatacaacttgtctaaaacactaaaataattttttgtcca 37859338  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 3579204 - 3579134
Alignment:
Q  18 ccatctctaaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgt 88  Q
    ||||| |||||||||| ||||| |||||||| ||  | ||| ||||| ||||||| |||||||||||||||    
T  3579204 ccatcactaaaccatatcacaactttttgtccaacattcaagttgtctaaaataccaaaatagtcttttgt 3579134  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 14155458 - 14155540
Alignment:
Q  9 aaattttacccatctctaaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtcca 91  Q
    |||||||| || || ||||| |||||||||| ||||||||| |||||||| ||||| ||||||  |||||| |||||||||||    
T  14155458 aaattttatccctcactaaatcataacacaactttttgtctcaagtacaagttgtctaaaatatcaaaataatcttttgtcca 14155540  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 37075242 - 37075180
Alignment:
Q  25 taaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttg 87  Q
    ||||||||||||||| ||||||||| | ||| || |||||||||||||  ||||||| |||||    
T  37075242 taaaccataacacaattttttgtcttacgtataagttgtccaaaatacagaaatagtattttg 37075180  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 8648581 - 8648637
Alignment:
Q  35 cacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtcca 91  Q
    ||||| ||||||||  |||||||| ||||| ||||||| |||||| |||||||||||    
T  8648581 cacaactttttgtcacaagtacaaattgtctaaaataccaaaataatcttttgtcca 8648637  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 29584945 - 29584848
Alignment:
Q  26 aaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtccatgatcaacatcgtataagataaaaaattattcaa 125  Q
    |||||| ||||||| ||||||||  | |||||| ||||| ||||||| |||||||  |||||||| | |  || ||||||||| ||||||||||| ||||    
T  29584945 aaaccacaacacaactttttgtcccacgtacaagttgtctaaaataccaaaatagcattttgtccttca--aaaatcgtataaaataaaaaattactcaa 29584848  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 26733635 - 26733566
Alignment:
Q  24 ctaaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtccatg 93  Q
    |||||||||||||||| |||||| || | |||||| ||||| ||||||| ||||||||||||||| ||||    
T  26733635 ctaaaccataacacaactttttgcctcatgtacaagttgtctaaaataccaaaatagtcttttgtacatg 26733566  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 28437714 - 28437661
Alignment:
Q  35 cacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgt 88  Q
    ||||| ||||||| |||||||||||||||||||||||  |||||| | ||||||    
T  28437714 cacaactttttgtttaaagtacaacttgtccaaaataacaaaataatgttttgt 28437661  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 15241 - 15177
Alignment:
Q  26 aaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtcc 90  Q
    |||||| ||||||| ||||||||| | |||||| ||||| |||||||||||||||| ||||||||    
T  15241 aaaccacaacacaactttttgtctcacgtacaagttgtctaaaatactaaaatagtattttgtcc 15177  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 41903602 - 41903684
Alignment:
Q  52 agtacaacttgtccaaaatactaaaatagtcttttgtccatgatcaacatcgtataagataaaaaattattcaaaatcataaaag 136  Q
    ||||||| ||||| ||||||||||||||||||||||||||  |  |||||| ||||| | |||||||| ||||| | ||||||||    
T  41903602 agtacaaattgtctaaaatactaaaatagtcttttgtccacca--aacatcatataaaacaaaaaattgttcaagaccataaaag 41903684  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 8054394 - 8054458
Alignment:
Q  22 ctctaaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtctttt 86  Q
    ||||| |||||||||||| ||||||||| |||||||| || |  ||||||| |||||||||||||    
T  8054394 ctctagaccataacacaactttttgtctcaagtacaagttttttaaaataccaaaatagtctttt 8054458  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 8054825 - 8054889
Alignment:
Q  22 ctctaaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtctttt 86  Q
    ||||| |||||||||||| ||||||||| |||||||| || |  ||||| | |||||||||||||    
T  8054825 ctctagaccataacacaactttttgtctcaagtacaagtttttaaaaatgccaaaatagtctttt 8054889  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 8844504 - 8844451
Alignment:
Q  38 aaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtcca 91  Q
    ||||||| |||| |||||||| ||||| || |||||||||||||||||||||||    
T  8844504 aaattttcgtctcaagtacaagttgtctaagatactaaaatagtcttttgtcca 8844451  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 15400652 - 15400711
Alignment:
Q  33 aacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtccat 92  Q
    ||||||| ||||||||| |||||||| ||||  ||||||  |||||||||||||||||||    
T  15400652 aacacaactttttgtcttaagtacaaattgtttaaaatatcaaaatagtcttttgtccat 15400711  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 15412439 - 15412498
Alignment:
Q  33 aacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtccat 92  Q
    ||||||| ||||||||| |||||||| ||||  ||||||  |||||||||||||||||||    
T  15412439 aacacaactttttgtcttaagtacaaattgtttaaaatatcaaaatagtcttttgtccat 15412498  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 15428033 - 15428092
Alignment:
Q  33 aacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtccat 92  Q
    ||||||| ||||||||| |||||||| ||||  ||||||  |||||||||||||||||||    
T  15428033 aacacaactttttgtcttaagtacaaattgtttaaaatatcaaaatagtcttttgtccat 15428092  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 13249419 - 13249487
Alignment:
Q  24 ctaaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtccat 92  Q
    |||||||| ||||||| |||||||| ||||||||| ||||  ||||||  ||||||| |||||||||||    
T  13249419 ctaaaccacaacacaattttttgtccaaagtacaagttgtttaaaatatcaaaatagacttttgtccat 13249487  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 37003889 - 37003986
Alignment:
Q  26 aaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtccatgatcaacatcgtataagataaaaaattattcaa 125  Q
    |||||| ||||||| ||||||||  | |||||| ||||| ||||||| ||||||   |||||||| | |  || ||||||||| ||||||||||||||||    
T  37003889 aaaccacaacacaactttttgtcccacgtacaaattgtctaaaataccaaaataacattttgtccctca--aaaatcgtataaaataaaaaattattcaa 37003986  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 41790489 - 41790542
Alignment:
Q  26 aaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaata 79  Q
    |||||| ||||||| ||||||||| | |||||| ||||| ||||||||||||||    
T  41790489 aaaccacaacacaactttttgtctcacgtacaaattgtctaaaatactaaaata 41790542  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 32528784 - 32528687
Alignment:
Q  26 aaaccataacacaaatttttgtctaaagtacaacttgtccaaaatactaaaatagtcttttgtccatgatcaacatcgtataagataaaaaattattcaa 125  Q
    |||||| ||||||| ||||||||  | |||||| ||||| ||||||| |||||||  |||||||| | |  || ||||||||| | ||||||||||||||    
T  32528784 aaaccacaacacaactttttgtcccacgtacaagttgtctaaaataccaaaatagcattttgtccctca--aaaatcgtataaaacaaaaaattattcaa 32528687  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 3731 - 3763
Alignment:
Q  104 tataagataaaaaattattcaaaatcataaaag 136  Q
    |||||||||||||||||||||| ||||||||||    
T  3731 tataagataaaaaattattcaatatcataaaag 3763  T

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