View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_high_7 (Length: 325)
Name: NF10098_high_7
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 91 - 307
Target Start/End: Complemental strand, 38827522 - 38827306
Alignment:
| Q |
91 |
ctgtcaaataacaggggccctggcgttgcaattcttatcatgtcatgggtcattaccttctacactatatggcaaatggttgagatgcacgaaatagttc |
190 |
Q |
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| T |
38827522 |
ctgtcaaataacaggggccctggcgttacaattcttatcatgtcatgggtcattaccttctacactatatggcaaatggttgagatgcatgaaatagttc |
38827423 |
T |
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| Q |
191 |
ccggaaagagattggataggtatcatgagttgggtcaagaagcctttggagagaaactgggtctctggattgtggttccacaacagattgttgttgaagt |
290 |
Q |
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| T |
38827422 |
ccggaaagagattggataggtatcatgagttgggtcaagaagcctttggagagaaactgggtctctggattgtggttccacaacagattgttgttgaagt |
38827323 |
T |
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| Q |
291 |
tggcacgtgtatcgtgt |
307 |
Q |
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| T |
38827322 |
tggcacgtgtatcgtgt |
38827306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 43853150 - 43853277
Alignment:
| Q |
149 |
tctacactatatggcaaatggttgagatgcacgaaatagttcccggaaagagattggataggtatcatgagttgggtcaagaagcctttggagagaaact |
248 |
Q |
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| T |
43853150 |
tctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgagttggggcaggaagcatttggagaaaagct |
43853249 |
T |
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| Q |
249 |
gggtctctggattgtggttccacaacag |
276 |
Q |
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| T |
43853250 |
tggactctggattgtcgtgccacaacag |
43853277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 290
Target Start/End: Complemental strand, 14198905 - 14198748
Alignment:
| Q |
133 |
tcatgggtcattaccttctacactatatggcaaatggttgagatgcacgaaatagttcccggaaagagattggataggtatcatgagttgggtcaagaag |
232 |
Q |
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| T |
14198905 |
tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg |
14198806 |
T |
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| Q |
233 |
cctttggagagaaactgggtctctggattgtggttccacaacagattgttgttgaagt |
290 |
Q |
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| T |
14198805 |
cttttggtgaaaagttgggtctgtatattgttgtgccacaacaacttattgttgaagt |
14198748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 7979508 - 7979444
Alignment:
| Q |
133 |
tcatgggtcattaccttctacactatatggcaaatggttgagatgcacgaaatagttcccggaaa |
197 |
Q |
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|||||| |||| || |||||||| | |||||||||||||||||||| ||||| ||||| ||||| |
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| T |
7979508 |
tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaa |
7979444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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