View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10098_low_1 (Length: 770)
Name: NF10098_low_1
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 653; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 1 - 759
Target Start/End: Complemental strand, 13500911 - 13500155
Alignment:
| Q |
1 |
ccctctttctaagtacatttcccaattacagtnnnnnnnnnnnncctgcttttcaatctgggtttgttttttacaattattgacaaaaatgttggtaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
13500911 |
ccctctttctaagtacatttcccaattacagttaaaaaaaaa--cctgcttttcaatctgggttttttttttacaattattgacaaaaatgttggtaatt |
13500814 |
T |
|
| Q |
101 |
aaattagggttaactggggttttagaattattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacactagaactagaatattcca |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13500813 |
aaattagggttaattggggttttagaattattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacactagaactagaatattcca |
13500714 |
T |
|
| Q |
201 |
agaattacgaaagaacttaagattaatatcatgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaagcagaggagtgtgtaatgt |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13500713 |
agaattacgaaaggacttaagattaatatcacgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaagcagaggagtgtgtaatgt |
13500614 |
T |
|
| Q |
301 |
ttgtaaacgcgggaggggaagcgactaatgaaggagctgatggagtgaagtttctgagtgacacnnnnnnngacggtggcaatgttttccacacgaatga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13500613 |
ttgtaaacgcgggaggggaagcgactaatgaaggagctgatggagtgaagtttctgagtgacactttttttgacggtggcaatgttttccacacgaatga |
13500514 |
T |
|
| Q |
401 |
ggcgattgcggaaggtggagattacccgttgatttatcagtcagctcgggtgggaagttttagttatagaattgataaccttcctcctggacaatatctt |
500 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13500513 |
ggcgattgtggaaggtggagattacccatcgatttatcagtcagctcgggtgggaagttttagttatagaattgataaccttcctcctggacaatatctt |
13500414 |
T |
|
| Q |
501 |
gttgacctgcattttgttgagattattaatgtaaatgggccgaaaggaatgagggtgttcaatgtttacatacaagaagaaaaggtgagctttttcacag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13500413 |
gttgacctgcattttgttgagattattaatgtaaatgggccgaaaggaatgagggtgttcaatgtttacatacaagaagaaaaggtgagctttttcacag |
13500314 |
T |
|
| Q |
601 |
aactaatgcttttgcatttgagaaacttgtagcttgaactcattttttaattgtaatattatggctggcaggttctatctgaattagatatctatgcagc |
700 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
13500313 |
aactaatgcttttgcatttgacaaacttgtagcttgaactcattttttaattgtaatattatggctggcaggttctatctgaattggatatctatgcagc |
13500214 |
T |
|
| Q |
701 |
tgttggagtcaacaagccactacagctgattgattgtcgggccactgtaaaggatgatg |
759 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13500213 |
tgttggagtcaacaagccgctacagctgattgattgtcgggccactgtgaaggatgatg |
13500155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 83 - 759
Target Start/End: Original strand, 21797019 - 21797695
Alignment:
| Q |
83 |
acaaaaatgttggtaattaaattagggttaactggggttttagaattattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacac |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21797019 |
acaaaaatgttggtaattaaattagggttaattggggttttagaattattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacac |
21797118 |
T |
|
| Q |
183 |
tagaactagaatattccaagaattacgaaagaacttaagattaatatcatgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaag |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21797119 |
tagaactagaatattccaagaattacgaaaggacttaagattaatatcatgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaag |
21797218 |
T |
|
| Q |
283 |
cagaggagtgtgtaatgtttgtaaacgcgggaggggaagcgactaatgaaggagctgatggagtgaagtttctgagtgacacnnnnnnngacggtggcaa |
382 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
21797219 |
cagaggagtgtgtaatgtttgtaaacgtgggaggggaagcgactaatgaaggagctgatggagtgaagtttctgagtgacactttttttgacggtggcga |
21797318 |
T |
|
| Q |
383 |
tgttttccacacgaatgaggcgattgcggaaggtggagattacccgttgatttatcagtcagctcgggtgggaagttttagttatagaattgataacctt |
482 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21797319 |
tgttttcctcacgaatgaggcgattgtggaaggtggagattacccgtcgatttatcagtcagctcgggtgggaagttttagttatagaattgataacctt |
21797418 |
T |
|
| Q |
483 |
cctcctggacaatatcttgttgacctgcattttgttgagattattaatgtaaatgggccgaaaggaatgagggtgttcaatgtttacatacaagaagaaa |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21797419 |
cctcctggacaatatcttgttgacctgcattttgttgagattattaatgtaaatgggccgaaaggaatgagggtgttcaatgtttacatacaagaagaaa |
21797518 |
T |
|
| Q |
583 |
aggtgagctttttcacagaactaatgcttttgcatttgagaaacttgtagcttgaactcattttttaattgtaatattatggctggcaggttctatctga |
682 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21797519 |
aggtgagctttttcacagaactaatgcttttgcatttgagaaacttgtagcctgaactcattttttaattgtaatattatggctggcaggttctatctga |
21797618 |
T |
|
| Q |
683 |
attagatatctatgcagctgttggagtcaacaagccactacagctgattgattgtcgggccactgtaaaggatgatg |
759 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21797619 |
attggatatctatgcagctgttggagtcaacaagccacttcagctgattgattgtcgggccactgtgaaggatgatg |
21797695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 83 - 759
Target Start/End: Original strand, 21717281 - 21717957
Alignment:
| Q |
83 |
acaaaaatgttggtaattaaattagggttaactggggttttagaattattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacac |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21717281 |
acaaaaatgttggtaattaaattagggttaattggggttttagaactattgtttaggttttgataaattgtaaatctgggtagtttgaaaaatgtaacac |
21717380 |
T |
|
| Q |
183 |
tagaactagaatattccaagaattacgaaagaacttaagattaatatcatgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaag |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21717381 |
tagaactagaatattccaagaattacgaaaggacttaagattaatatcatgtattaatttgttaaattgagtgttcacttttaacgtatacattttgaag |
21717480 |
T |
|
| Q |
283 |
cagaggagtgtgtaatgtttgtaaacgcgggaggggaagcgactaatgaaggagctgatggagtgaagtttctgagtgacacnnnnnnngacggtggcaa |
382 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
21717481 |
cagaggagtgtgtaatgtttgtaaacgtgggaggggaagcgactaatgaaggagctgatggagtgaagtttctgagtgacactttttttgacggtggcga |
21717580 |
T |
|
| Q |
383 |
tgttttccacacgaatgaggcgattgcggaaggtggagattacccgttgatttatcagtcagctcgggtgggaagttttagttatagaattgataacctt |
482 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21717581 |
tgttttcctcacgaatgaggcgattgtggaaggtggagattacccgtcgatttatcagtcagctcgggtgggaagttttagttatagaattgataacctt |
21717680 |
T |
|
| Q |
483 |
cctcctggacaatatcttgttgacctgcattttgttgagattattaatgtaaatgggccgaaaggaatgagggtgttcaatgtttacatacaagaagaaa |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21717681 |
cctcctggacaatatcttgttgacctgcattttgttgagattattaatgtaaatgggccgaaaggaatgagggtgttcaatgtttacatacaagaagaaa |
21717780 |
T |
|
| Q |
583 |
aggtgagctttttcacagaactaatgcttttgcatttgagaaacttgtagcttgaactcattttttaattgtaatattatggctggcaggttctatctga |
682 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21717781 |
aggtgagctttttcacagaactaatgcttttgcatttgagaaacttgtagcctgaactcattttttaattgtaatattatggctggcaggttctatctga |
21717880 |
T |
|
| Q |
683 |
attagatatctatgcagctgttggagtcaacaagccactacagctgattgattgtcgggccactgtaaaggatgatg |
759 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21717881 |
attggatatctatgcagctgttggagtcaacaagccacttcagctgattgattgtcgggccactgtgaaggatgatg |
21717957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 21717212 - 21717243
Alignment:
| Q |
1 |
ccctctttctaagtacatttcccaattacagt |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21717212 |
ccctctttctaagtacatttcccaattacagt |
21717243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 21796948 - 21796979
Alignment:
| Q |
1 |
ccctctttctaagtacatttcccaattacagt |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21796948 |
ccctctttctaagtacatttcccaattacagt |
21796979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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