View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_11 (Length: 421)
Name: NF10098_low_11
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 42121175 - 42121567
Alignment:
| Q |
19 |
agtccaatggtcgagattgagttggaccagcagcagggttgtggataatccagatggcgataatttccttgcatagagaatctaagcgtaacaacggtac |
118 |
Q |
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| T |
42121175 |
agtccaatggtcgagattgagttggaccagcagcagggttgtggataatccagatggcgataatttctttgcatagagaatctaagcgtaacaacggtac |
42121274 |
T |
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| Q |
119 |
taggaaaatagttaattttaaaggaaaacagaaacaactttatttattttctccatttccacttgggtcaggattttcactgccttaccgtataaggaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42121275 |
taggaaaatagttaattttaaaggaaaacagaaacaactttatttattttctccatttccacttgggtcaggattttcactgccttaccgtataaggaat |
42121374 |
T |
|
| Q |
219 |
gcctttaaatattctcaacattggtgaaggctcactctttgaaactataaacgtgcaatcgtaaatgaatggaatgaatgtccgtgtatgtgttactgct |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
42121375 |
gcctttaagtattctcaacattggtgaaggctcactctttgaaactataaacgtgcaatcgtaaatgactggaatgaatgtccgtgtatgtgttacagct |
42121474 |
T |
|
| Q |
319 |
ttgacaaaaccctgcagaaagattatcagtcgtgaaagataattatgagctaaaacaaaatcagaatgtgtaatatgtagtttgaaacctatg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42121475 |
ttgacaaaaccctgcagaaagattatcagtcgtgaaagataattatgagctaaaacaaaatcagaatgtgtaatatgtagtttgaaacctatg |
42121567 |
T |
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