View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_13 (Length: 411)
Name: NF10098_low_13
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 30503457 - 30503844
Alignment:
| Q |
19 |
gtcattataaaacatgatgattcataatcttatctttaatttctgctacaccaagcagaatacatacatacatacaatacaacaatttaatgacaaccag |
118 |
Q |
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| T |
30503457 |
gtcattataaaacatgatgattcataatcttatctttaatttctgctacaccaagcagaatacatacatacatacaatacaacaaattaatgacaaccag |
30503556 |
T |
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| Q |
119 |
aaatctttcacaaaatttaactgacaaataaataaaacctaaacctactagctactactagtacttaaaattaattagacaattaataatattcatgact |
218 |
Q |
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| T |
30503557 |
aaatctttcacaaaatttaactgacaaataaataaaacctaaacctactagctactactagtacttaaaattaattagacaattaataatattcatgact |
30503656 |
T |
|
| Q |
219 |
tgagataaataaagatagttttttccatggaatatgagaatagccattttattgagttgcacctggaggtggaagctgatgttgatggtgatgatgaaga |
318 |
Q |
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| T |
30503657 |
tgagataaataaagatagttttttccatggaatatgagaatagccattttattgagttgcacctggaggtggaagctgatgttgatggtgatgatgaaga |
30503756 |
T |
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| Q |
319 |
tgaagaggcaattgcaattgcattggttgttgctgctgaagctgaagctgttgtggttgttgttgtggtggacgtttcctttgcttct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30503757 |
tgaagaggcaattgcaattgcattggttgttgctgctgaagctgaagctgttgtggttgttgttgtggtggacgtttccttttcttct |
30503844 |
T |
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