View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_15 (Length: 397)
Name: NF10098_low_15
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 386
Target Start/End: Complemental strand, 3883042 - 3882669
Alignment:
| Q |
14 |
agacgaaagaataataattttctaaaacaataatgatagccaatgacaattgtaaattgtaatgcagtaaaaacatttccagcgatacaatcttaacaca |
113 |
Q |
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| T |
3883042 |
agacgaaagaataataattttctaaaacaataatgatagtcaatgacaattgtaaattgtaatgcagtaaaaacatttccagcgatacaatcttaacaca |
3882943 |
T |
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| Q |
114 |
ttctttccaacacccacatacaggttgagtcttaacacattctagcaatacaatcttaacacattctttacacacttgttgagtctcaatctctattggg |
213 |
Q |
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| T |
3882942 |
ttctttccaacacccacatacaggttgagtcttaacacattctagcaatacaatcttaacacattctttacacacttgttgagtctcaatctctattggg |
3882843 |
T |
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| Q |
214 |
ttggaactgggaaccatttcctacgtggtaggactcatgaatttcacccaataacaaagagcgtacaaaagaatgcgtctgatagtgtgttgctagaatt |
313 |
Q |
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| T |
3882842 |
ttggaactgggaaccatttcctacgtggtaggactcatgaatttcactcaataacaaagagcgtacaaaagaatgcgtctgatagtgtgttgctagaatt |
3882743 |
T |
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| Q |
314 |
tttcatgcagaaaatatgaaaaaacatattaccacaa-aaattttaaagtatatctagaacaataatcatgatg |
386 |
Q |
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| T |
3882742 |
tttcatgcagaaaatatgaaaaaacatattaccacaataaattttaaagtatatccagaacaataatcatgatg |
3882669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 3869337 - 3869296
Alignment:
| Q |
195 |
agtctcaatctctattgggttggaactgggaaccatttccta |
236 |
Q |
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| T |
3869337 |
agtctcaatctctattaggttggaactgggaaccatttccta |
3869296 |
T |
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