View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_17 (Length: 383)
Name: NF10098_low_17
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 58 - 365
Target Start/End: Original strand, 38375049 - 38375356
Alignment:
| Q |
58 |
ccacaagtcatacactcacacatttcttttccatttttattaattttgacaaagtagttccaaacattaaaccttttaagcttcttttttggtggttcag |
157 |
Q |
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| T |
38375049 |
ccacaagtcatacactcacacatttcttttccatttttattaattttgacaaagtagttccaaacattaaaccttttaagcttcttttttggtggttcag |
38375148 |
T |
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| Q |
158 |
aatcaccgtcaccagaatatgctgagttacaagtttgtaaaatttgacattcattcccaacgccacatctctcattgttgcaatccatactgcaaaaata |
257 |
Q |
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| T |
38375149 |
aatcaccgtcaccagaatatgctgagttacaagtttgtaaaatttgacattcattcccaacgccacatctctcattgttgcaatccatactgcaaaaata |
38375248 |
T |
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| Q |
258 |
gtcaaacaaacatataaatacacaaaacatgccacattcaaaactcattagcgcatatagcattacacacaaagacaatgctgagtattaattttactcg |
357 |
Q |
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| T |
38375249 |
gtcaaacaaacatataaatactcaaaacatgccacattcaaaactcattagcgcatatagcattacacacaaagacaatgctgagtattaattttactcg |
38375348 |
T |
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| Q |
358 |
ctaacacc |
365 |
Q |
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|| ||||| |
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| T |
38375349 |
ctgacacc |
38375356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 38380183 - 38380361
Alignment:
| Q |
1 |
ggaatatgttggattagatgagagatacctgatcttccgccacaagtaaacagtttcccacaagtcatacactcacacatttcttttccatttttattaa |
100 |
Q |
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||||||||| || ||||||||||| ||||||| ||||| |||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||| || |
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| T |
38380183 |
ggaatatgtaggtttagatgagagttacctgaccttccatcacaagtaaacactctcccacaagtcatacattcacacatttcttttccatctttatgaa |
38380282 |
T |
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| Q |
101 |
ttttgacaaagtagttccaaacattaaaccttttaagcttcttttttggtggttcagaatcaccgtcaccagaatatgc |
179 |
Q |
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||||||||||||||||||||||||||||||||||||| | || ||||| ||||| |||||||| | | |||||||||| |
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| T |
38380283 |
ctttgacaaagtagttccaaacattaaaccttttaagccttttctttggaggttcggaatcaccataatcagaatatgc |
38380361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 47 - 188
Target Start/End: Original strand, 38370339 - 38370477
Alignment:
| Q |
47 |
taaacagtttcccacaagtcatacactcacacatttcttttccatttttattaattttgacaaagtagttccaaacattaaaccttttaagcttcttttt |
146 |
Q |
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||||| ||||||||||||| |||| ||||||| |||||| |||| | | |||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
38370339 |
taaactgtttcccacaagttttacattcacacagttctttaccatctgcttcaattttaacaaagtagttccaaacattaaaccttttaagcttcttatt |
38370438 |
T |
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| Q |
147 |
tggtggttcagaatcaccgtcaccagaatatgctgagttaca |
188 |
Q |
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| T |
38370439 |
tggtggttcatgatcac---catcagaatatgctgagttaca |
38370477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38375010 - 38375056
Alignment:
| Q |
1 |
ggaatatgttggattagatgagagatacctgatcttccgccacaagt |
47 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38375010 |
ggaatatgttggattagatgagagatacctgatcttccgccacaagt |
38375056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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