View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_2 (Length: 627)
Name: NF10098_low_2
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 18 - 617
Target Start/End: Original strand, 20130942 - 20131541
Alignment:
| Q |
18 |
gattccaccagagattggaaagttgtcaaatcttttggtgtttttcgcttggcagaatcagcttgaaggaagcattccttcaagtttaggaaactgtagt |
117 |
Q |
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| T |
20130942 |
gattccaccagagattggaaagttgtcaaatcttttggtgtttttcgcttggcagaatcagcttgaaggaagcattccttcaagtttaggaaactgtagt |
20131041 |
T |
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| Q |
118 |
aaacttcaagcacttgatttgtctaaaaattcactcactggtagcattccttcaggactgtttcagcttcaaaacctcacaaaactgcttttgatttcaa |
217 |
Q |
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| T |
20131042 |
aaacttcaagcacttgatttgtctagaaattcactcactggtagcattccttcaggactatttcagcttcaaaacctcacaaaactgcttttgatttcaa |
20131141 |
T |
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| Q |
218 |
atgatatatcaggttctataccatcagaaataggtagttgtaaatctcttataaggttgaggcttggaaacaataggattactggaagcattcctaagac |
317 |
Q |
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| T |
20131142 |
atgatatatcaggttctataccatcagaaataggtagttgcaaatctcttataaggttgaggcttggaaacaataggattactggaagcattcctaagac |
20131241 |
T |
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| Q |
318 |
aataggaaatctcaggaatttgaactttttagatctctctgggaaccgtctttcagggccggttcccgatgaaataagaagctgcatacaacttcaaatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20131242 |
aataggaaatctcaggaatttgaactttttagatctctctgggaaccgtctttcagcgccggttcccgatgaaataagaagctgcgtacaacttcaaatg |
20131341 |
T |
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| Q |
418 |
atagacttcagctctaacaacttagaaggctcgcttcctaattccttgtcatcgttatcttcacttcaggtattggatgcatcttttaacaagttttcag |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20131342 |
atagacttcagctctaacaacttagaaggctcgcttcctaattccttgtcatcattatcttcacttcaggtattggatgcatcgtttaacaagttttcag |
20131441 |
T |
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| Q |
518 |
gtccgttgccggcaggtttaggtcgtcttgtttcattaagtaagttaatctttggaaataacttgttttctggaccaattcctgaatcactaagcctatg |
617 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20131442 |
gtccgttgccggcaagtttaggtcgtcttgtttcattaagtaagttaatctttggaaataacttgttttctggaccaattcctgcatcactaagcctatg |
20131541 |
T |
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