View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10098_low_21 (Length: 291)
Name: NF10098_low_21
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 44603602 - 44603361
Alignment:
| Q |
18 |
attgggagactagagaaaagggaaaatgggaatctagtcctgatatttttggtcaattttctgctgatcctgatcaagaatctaacttaactccatgaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44603602 |
attgggagactagagaaaagggaaaatgggaatctagtcctgatatttttggtcaattttctgctgatcctgatcaagaatctaacttaactccatgaat |
44603503 |
T |
|
| Q |
118 |
tctcagtgattgattagatattcatagacattcttgtcatcattaatacttatttgagcattaaagaaaatagtttgattaaaggtttgatgtgtataga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44603502 |
tctcagtgattgattagatattcatagacattcttgtcatcattaatacttatttgagcattaaagaaaatattttgattaaaggtttgatgtgtataga |
44603403 |
T |
|
| Q |
218 |
tgcatgtatagaatgcaatgtttgttctcaataaagtaagta |
259 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44603402 |
tgcatgtagagaatgcaatgtttgttctcaataaagtaagta |
44603361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University