View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_24 (Length: 278)
Name: NF10098_low_24
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 14109679 - 14109426
Alignment:
| Q |
1 |
gaactaggaagagactaaagtggaggattcggatacaagagaaacagtgtaaacagttagtagcatgtgacgggtaagggtctagataggaaagtgatag |
100 |
Q |
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|||||| ||||||| ||||||| ||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |
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| T |
14109679 |
gaactaagaagagattaaagtgcaggattcagatagaagagaaacagtgtaaacagttagcagcatgtgacgggtaaggatctagataggaacgtgataa |
14109580 |
T |
|
| Q |
101 |
gattcaacagaagtcaaaggaaaataacaagaatcgcactgttagttacatttctatctctacataatacattacccctcctaacatagaccttttccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
14109579 |
gattcaacagaagtcaaaggaaaataacaagaattgaactgttagttacatttctatctctacataatacattacccctcctaac--agaccttttgcac |
14109482 |
T |
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| Q |
201 |
aaaaggtcaaaaggtctcctatcagaaacagacctgaatggtcactggtcttggttg |
257 |
Q |
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|||| |||||||||||||| || ||||||| | |||||||| || ||| |||||||| |
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| T |
14109481 |
aaaa-gtcaaaaggtctccaattagaaacatatctgaatggccattggccttggttg |
14109426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 41710564 - 41710714
Alignment:
| Q |
107 |
acagaagtcaaaggaaaataacaagaatcgcactgttagttacatttctatctctacataatacattacccctcctaacatagaccttttccaaaaaagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41710564 |
acagaagtcaaaggaaaataacaagaatcgcactgttagttacatttctatctctacataatacattacccctcctaacatagaccttttccaaaaaagg |
41710663 |
T |
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| Q |
207 |
tcaaaaggtctcctatcagaaacagacctgaatggtcactggtcttggttg |
257 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
41710664 |
tcaaaaggtctcctatcagaaacagatctgaatggtcaccggtcttggttg |
41710714 |
T |
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