View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_26 (Length: 268)
Name: NF10098_low_26
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_26 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 54 - 268
Target Start/End: Original strand, 5098583 - 5098797
Alignment:
| Q |
54 |
atggtgcctgcaaacctttttattgctaacaattgttttctattttttgttgaagtttctatacatggtaaatttgtgtaatcctaaatagaggtgaact |
153 |
Q |
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| T |
5098583 |
atggtgcctgcaaacctttttattgctaacaattgttttctattttttgttgaagtttctatacatggtaaatttgtgtaatcctaaatagaggtgaact |
5098682 |
T |
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| Q |
154 |
attgtatgttgttctgttacaattcttccatgtcatatatagcttttggcaggtcactctaattatattaccgactacgaggaatgtacagttttgaaat |
253 |
Q |
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| T |
5098683 |
attgtaagttgttctgttacaattcttccatgtcatatatagcttttggcagttcactctaattgtattaccgactgcgaggaatgtacagttttgaaat |
5098782 |
T |
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| Q |
254 |
tttatttgacatatc |
268 |
Q |
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| T |
5098783 |
tttatatgacatatc |
5098797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 5242310 - 5242237
Alignment:
| Q |
41 |
aaaatcaattcttatggtgcctgcaaacctttttattgctaacaattgttttctattttttgttgaagtttcta |
114 |
Q |
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| T |
5242310 |
aaaatcaattcttatagtgcctggaaacctgtttattggcaacaattgttttccatctttttctgtagtttcta |
5242237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 192
Target Start/End: Complemental strand, 5100550 - 5100520
Alignment:
| Q |
162 |
ttgttctgttacaattcttccatgtcatata |
192 |
Q |
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| T |
5100550 |
ttgttctgttacaattcttccatgtcatata |
5100520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 47985134 - 47985048
Alignment:
| Q |
117 |
catggtaaatttgtgtaatcctaaatagaggtgaactattgtatgttgttctgttacaattcttccatgtcatatatagcttttggc |
203 |
Q |
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| T |
47985134 |
catggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatatctagtttttggc |
47985048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 47994421 - 47994335
Alignment:
| Q |
117 |
catggtaaatttgtgtaatcctaaatagaggtgaactattgtatgttgttctgttacaattcttccatgtcatatatagcttttggc |
203 |
Q |
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| T |
47994421 |
catggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatatctagtttttggc |
47994335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 48003708 - 48003622
Alignment:
| Q |
117 |
catggtaaatttgtgtaatcctaaatagaggtgaactattgtatgttgttctgttacaattcttccatgtcatatatagcttttggc |
203 |
Q |
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| T |
48003708 |
catggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatatctagtttttggc |
48003622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 48012993 - 48012907
Alignment:
| Q |
117 |
catggtaaatttgtgtaatcctaaatagaggtgaactattgtatgttgttctgttacaattcttccatgtcatatatagcttttggc |
203 |
Q |
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| T |
48012993 |
catggtaaatttttgtaatcctaaagataggtgaaagattacaatttgttatgttacaattcttccacgtcatatctagtttttggc |
48012907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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