View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_28 (Length: 258)
Name: NF10098_low_28
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 11002882 - 11003090
Alignment:
| Q |
36 |
gggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaataa |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11002882 |
gggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaacaa |
11002981 |
T |
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| Q |
136 |
gtgctaaggaggcaaaaggaggaggtggatcttctcttgttgatttgaaaaggttaggagattcttggagggagcatgcttctttgactaatttatctcc |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11002982 |
gtgctaaggaggcaaaaggaggaggtggatcttctcttgttgatttgaaaaggttaggagattcttggagggagcatgcttctttgactagtttatctcc |
11003081 |
T |
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| Q |
236 |
aaattcccc |
244 |
Q |
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||||||||| |
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| T |
11003082 |
aaattcccc |
11003090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 11080023 - 11080231
Alignment:
| Q |
36 |
gggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaataa |
135 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
11080023 |
gggtttgtgagtgaaaatgagttgggggagagagttaaggagttgatggaatcagaaaaggggaaagaggttagagagacaattttgaagatgaaaataa |
11080122 |
T |
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| Q |
136 |
gtgctaaggaggcaaaaggaggaggtggatcttctcttgttgatttgaaaaggttaggagattcttggagggagcatgcttctttgactaatttatctcc |
235 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||| |
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| T |
11080123 |
gtgctaaggaagcaagaggaggaggtggatcttctcttgttgatttgaaaaagttaggagattcttggagggagcatgcttcttggactagtgtatctcc |
11080222 |
T |
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| Q |
236 |
aaattcccc |
244 |
Q |
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||||||||| |
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| T |
11080223 |
aaattcccc |
11080231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 253
Target Start/End: Original strand, 11019264 - 11019480
Alignment:
| Q |
37 |
ggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaataag |
136 |
Q |
| |
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||||||||||||| | |||||||| |||||||||||||||||||||||||| || || || || |||| ||||| |||||||| ||||||||||| |
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| T |
11019264 |
ggtttgtgagtggcacagagttgggtgagagagttaaggagttgatggaatcggaccgtggaaaggatattaaagagaggattttgaaaatgaaaataag |
11019363 |
T |
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| Q |
137 |
tgctaaggaggcaaaaggaggaggtggatcttctcttgttgatttgaaaaggttaggagattcttggagggagcatgcttctttgactaatttatctcca |
236 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||| || || |||||| ||| |
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| T |
11019364 |
tgctaaggaggcaagaggaggaggtggatcttctcttgttgatttgaaaaagttgggagattcatggagggagcatgcttcttggaatagtttatcacca |
11019463 |
T |
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| Q |
237 |
aattcccctttgcttct |
253 |
Q |
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||||||||||| ||||| |
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| T |
11019464 |
aattcccctttccttct |
11019480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 10968702 - 10968850
Alignment:
| Q |
36 |
gggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaataa |
135 |
Q |
| |
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|||||||||||||||| ||||| ||||| || ||||||| || ||||| || || ||||||||||||||||| | | ||||| ||||||||||||| |
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| T |
10968702 |
gggtttgtgagtggaaccgagttaggggatcgaattaaggaattaatggactccgataaagggaaagagattaggaaaattattttcaagatgaaaataa |
10968801 |
T |
|
| Q |
136 |
gtgctaaggaggcaaaaggaggaggtggatcttctcttgttgatttgaa |
184 |
Q |
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||||||| ||||||| || || ||||||| ||| ||||||| |||||| |
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| T |
10968802 |
gtgctaaagaggcaagagaagaaggtggaagttcacttgttgctttgaa |
10968850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 10982652 - 10982780
Alignment:
| Q |
36 |
gggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatcagaaaaagggaaagagattagagagacaattttgaagatgaaaataa |
135 |
Q |
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|||||||||||||||| ||||| ||||| | ||||||| || ||||| || || || ||||||||||||||| | | ||||| ||||||||||||| |
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| T |
10982652 |
gggtttgtgagtggaaccgagttaggggatcaaattaaggaattaatggactccgataaggggaaagagattagacaaattattttcaagatgaaaataa |
10982751 |
T |
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| Q |
136 |
gtgctaaggaggcaaaaggaggaggtgga |
164 |
Q |
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||||||| ||||||| || || ||||||| |
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| T |
10982752 |
gtgctaaagaggcaagagaagaaggtgga |
10982780 |
T |
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