View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_3 (Length: 500)
Name: NF10098_low_3
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 1373368 - 1372911
Alignment:
| Q |
19 |
agccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagacgacatcatagaggaagccatgtttttctcccttagttcacta |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373368 |
agccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagaggacatcatagaggaagccatgtttttctcccttagttcacta |
1373269 |
T |
|
| Q |
119 |
gtaagatagtaagatatacttctgcttgaattgcaaaacctgtactcaaacttatatatatactatttttaattttctatttccaatattatggtcttat |
218 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373268 |
gtaagata--------tacttctgcttgaattgcaaaacctatactcaaacttatatatatactatttttaattttctatttccaatattatggtcttat |
1373177 |
T |
|
| Q |
219 |
aaattgtggtaatgcttcataataccattttgttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagcc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373176 |
aaattgtggtaatgcttcataataccattttgttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagcc |
1373077 |
T |
|
| Q |
319 |
ttatcattagccaccaatatgaaattgccacgtgtagttttgcgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373076 |
ttatcattagccaccaatatgaaattgccacgtgtagttttgtgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctggc |
1372977 |
T |
|
| Q |
419 |
tccttactggggcaatcaatattagccattactttttccaccctatttggttcttgagcgccctat |
484 |
Q |
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| T |
1372976 |
tccttactggggcaatcaatattagccattactttttccaccctatttggttcttgagcgccctat |
1372911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 1383644 - 1383248
Alignment:
| Q |
19 |
agccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagacgacatcatagaggaagccatgtttttctcccttagttcacta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
1383644 |
agccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagaggacatcatagaggaagccatgtttttctcccttacttt---- |
1383549 |
T |
|
| Q |
119 |
gtaagatagtaagatatacttctgcttgaattgcaaaacctgtactcaaactta-tatatatactatttttaattttctatttccaatattatggtctta |
217 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
1383548 |
gttcactagtaagatatacttctgcttgaattgcaaagcctatactcaaacttgctttatataatgtttttatttttctatttccaatattatggtctta |
1383449 |
T |
|
| Q |
218 |
taaattgtggtaatgcttcataataccattttgttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagc |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1383448 |
taaattgtggtaatgcttcataataccattttgt-------gaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagc |
1383356 |
T |
|
| Q |
318 |
cttatcattagccaccaatatgaaattgccacgtgtagttttgcgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctgg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
1383355 |
cttatcattagccaccaatatgaaattgccacgtgtagttttgtgactattaatgcctccacaaatatcaatcatctatggtacttttttcaggcattgg |
1383256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 1389749 - 1389353
Alignment:
| Q |
19 |
agccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagacgacatcatagaggaagccatgtttttctcccttagttcacta |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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|
| T |
1389749 |
agccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagaggacatcatagaggaagccatgtttttctcccttacttt---- |
1389654 |
T |
|
| Q |
119 |
gtaagatagtaagatatacttctgcttgaattgcaaaacctgtactcaaactta-tatatatactatttttaattttctatttccaatattatggtctta |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||| | |||||| ||||||||||||||||||||||||||| |
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|
| T |
1389653 |
gttcactagtaagatatacttctgcttgaattgcaaagcctatactcaaacttgctttatataatgtttttatttttctatttccaatattatggtctta |
1389554 |
T |
|
| Q |
218 |
taaattgtggtaatgcttcataataccattttgttggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1389553 |
taaattgtggtaatgcttcataataccattttgt-------gaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgctagc |
1389461 |
T |
|
| Q |
318 |
cttatcattagccaccaatatgaaattgccacgtgtagttttgcgactattaatgcctccacaaatatcaatcatgtatggtacttttttcaggctctgg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
1389460 |
cttatcattagccaccaatatgaaattgccacgtgtagttttgtgactattaatgcctccacaaatatcaatcatctatggtacttttttcaggcattgg |
1389361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 1358025 - 1357650
Alignment:
| Q |
19 |
agccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagacgacatcatagaggaagcca-tgtttttctcc----cttagtt |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||| | ||||||||| ||||||| |
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| T |
1358025 |
agccaccgcgccggattgtaccgaagaggcgcggttaactgtagtcatagctgaagaggaaatcatagaggaagccattttttttctcccttacttagtt |
1357926 |
T |
|
| Q |
114 |
cactagtaagatagtaagatatacttctgcttgaattgcaaaacctgtactcaaactt-atatatatactatttttaattttctatttccaatattatgg |
212 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||| |||||||| | | |||| |||| ||||||||||||||||| |
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| T |
1357925 |
cactagtaa---tgtaagatatacttctgcttgaatttcaaagcctatactcaaacttgctatatataatgtctttatttttgtatttccaatattatgg |
1357829 |
T |
|
| Q |
213 |
tcttataaattgtggtaa-----tgcttcataataccattttg-ttggttgtgaatatgataaactttgctgccatatcaaccac---acaggaatggaa |
303 |
Q |
| |
|
| || |||||||||||| |||| |||||||| |||||| ||| ||||||| ||||||||| |||| ||| || |||||| ||| || ||||| |
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|
| T |
1357828 |
ttctaaaaattgtggtaactggttgctgcataatacaattttgtttgattgtgaaaatgataaacattgcagcc--attaaccacacaacaagattggaa |
1357731 |
T |
|
| Q |
304 |
atttttgtgctagccttatcattagccaccaatatgaaattgccacgtgtagttttgcgactattaatgcctccacaaatat |
385 |
Q |
| |
|
||||||||| | |||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||| |
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| T |
1357730 |
atttttgtggt-gccttatctttagccaccaatatgaaattgccacgtgtagttgtgtgactattaatgcttccataaatat |
1357650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 327
Target Start/End: Complemental strand, 1350066 - 1349767
Alignment:
| Q |
23 |
accgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagacgacatcatagaggaagccatgtttttctcccttagttcactagtaa |
122 |
Q |
| |
|
||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||| |
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|
| T |
1350066 |
accgcgccggattgtaccgaagagacgcggttaactgtagtcacagctgaagaggacatcatagaggaagccattttttt----cttagttcac------ |
1349977 |
T |
|
| Q |
123 |
gatagtaagatatacttctgcttgaattgcaaaacctgtactcaaactt-atatatatact-atttttaattttctatttccaatattatggtcttataa |
220 |
Q |
| |
|
||||| | | |||||| ||||||||||||| | | |||| |||||| |||||||| | |||||| ||||||||||||||||||||||||||| | |
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|
| T |
1349976 |
--aagtaaaacacacttctacttgaattgcaaagcttctactaaaacttgctatatataatggtttttatttttctatttccaatattatggtctta-at |
1349880 |
T |
|
| Q |
221 |
attgtggtaa-----tgcttcataataccattttgtt-ggttgtgaatatgataaactttgctgccatatcaaccacacaggaatggaaatttttgtgct |
314 |
Q |
| |
|
|||||||||| | || | |||||||| ||||| | || |||| ||||||| | ||| | |||| ||||||||| |||||||||||| |||| | |
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|
| T |
1349879 |
attgtggtaattggctactgcctaataccaacttgttagattttgaaaatgataatcattgaacctatattaaccacacaagaatggaaatttgtgtgtt |
1349780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 1393681 - 1393604
Alignment:
| Q |
19 |
agccaccgcaccggattgtaccgaagaggcacggttaactgtagtcacagctgaagacgacatcatagaggaagccat |
96 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||| || ||||||||||||||||| |
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| T |
1393681 |
agccaccgcaccggattgtaccggagaggcacggttaactgtagtgatagctgaagaggagatcatagaggaagccat |
1393604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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