View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_31 (Length: 253)
Name: NF10098_low_31
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_31 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 253
Target Start/End: Complemental strand, 27795260 - 27795012
Alignment:
| Q |
7 |
gagaagcaaagggagttggtggaaagctatggacctcataattggaacgccatagctgaaaatctccgaggaagatcaggtaaaattaatgatcatatac |
106 |
Q |
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| T |
27795260 |
gagaagcttagggagttggtggaaagctatggacctcataattggaacgccatagctgaaaatctccgaggaagatcaggtaaaattaatgatcatatac |
27795161 |
T |
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| Q |
107 |
ttaattattgtaattattcattcaactaaaaataacaaattcaag--nnnnnnnnnttcaacaaacatggagtatgtatacaagaaaatgatagcatact |
204 |
Q |
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| T |
27795160 |
ttaattattgtgattattcattcaactaaaaataacaaattcaagaaaaaaaatatttcaacaaccatggagtatgtatacaagaaaatgatagcatact |
27795061 |
T |
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| Q |
205 |
taactcttaggtagagatttgtaatagttttgtataatataaatacgtt |
253 |
Q |
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| T |
27795060 |
taactcttaggtagagatttttaatagttttgtataatataaatacgtt |
27795012 |
T |
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