View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_32 (Length: 251)
Name: NF10098_low_32
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_32 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 39 - 251
Target Start/End: Original strand, 1668126 - 1668338
Alignment:
| Q |
39 |
taacaaagttgagtacccaaagttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgtggta |
138 |
Q |
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| T |
1668126 |
taacaaagttgagtacccaaacttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgcggca |
1668225 |
T |
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| Q |
139 |
atagaattggtggtgttccggaatcaaccaacatgttagcctttccaatagtactattcatgggaaaatatgtgtcttccacactaatgcctcgtaatga |
238 |
Q |
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| T |
1668226 |
atagaattggtggtgttcctgaatcaaccaacatgttagcctttccaatagtactattcatgggaaaatatgtgtcttccacactaatacctagtaatgt |
1668325 |
T |
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| Q |
239 |
aacaaaatatgat |
251 |
Q |
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| T |
1668326 |
aacaaaatatgat |
1668338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 1679662 - 1679871
Alignment:
| Q |
42 |
caaagttgagtacccaaagttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgtggtaata |
141 |
Q |
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| T |
1679662 |
caaagttgaggacccaaacttggatcatccgtaatgggttccaatggaactttgtttttgacttcaacatacactctatcatacaattgttgtggtaata |
1679761 |
T |
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| Q |
142 |
gaattggtggtgttccggaatcaaccaacatgttagcctttccaatagtactattcatgggaaaatatgtgtcttccacactaatgcctcgtaatgaaac |
241 |
Q |
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| T |
1679762 |
tattcggtggtgttcccgaatcaaccaacatgttacccttttcaatagtactattcatgggaagatatgtgtcttccacactaatacctagtaatgtaac |
1679861 |
T |
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| Q |
242 |
aaaatatgat |
251 |
Q |
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| T |
1679862 |
ataatatgat |
1679871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 1660864 - 1661073
Alignment:
| Q |
42 |
caaagttgagtacccaaagttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttgtggtaata |
141 |
Q |
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|||||||||| ||||||| ||||||||| ||||||| ||| |||| ||| || ||| | |||||| || ||||| |||||||||||||||||||||||| |
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| T |
1660864 |
caaagttgaggacccaaacttggatcatttgtaatgagttctaatggaacattgtttttgacttcaacatacactctatcatacaattgttgtggtaata |
1660963 |
T |
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| Q |
142 |
gaattggtggtgttccggaatcaaccaacatgttagcctttccaatagtactattcatgggaaaatatgtgtcttccacactaatgcctcgtaatgaaac |
241 |
Q |
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| | ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||| |
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| T |
1660964 |
tattcggtggtgttcccgaatcaaccaacatgttacccttttcaatagtactattcatgggaagatatgtgtcttccacactaatacctagtaatgtaac |
1661063 |
T |
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| Q |
242 |
aaaatatgat |
251 |
Q |
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| T |
1661064 |
aaaatatgat |
1661073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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