View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_33 (Length: 250)
Name: NF10098_low_33
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 49008954 - 49008715
Alignment:
| Q |
1 |
tgacattgtgtttcgagtctgtccaagtgagatacccaaaaactactttattttcctccattttgggaccttctatcctcaacttgtatgccaccttttc |
100 |
Q |
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| T |
49008954 |
tgacattgtgtttcgagtctgtccaagtgagatacccaaaaactactttattttcctccattttgggaccttctatcctcaacttgtatgccaccttttc |
49008855 |
T |
|
| Q |
101 |
atttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggctacgtagatggttggttcctctccaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008854 |
atttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggctacgtagatggttggttcctctccaaca |
49008755 |
T |
|
| Q |
201 |
ttggttactgttctttgaaattcttgtgtaatcacctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
49008754 |
ttggttactgttctttgaaattcttgtgtaatcacctttg |
49008715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 9947862 - 9947920
Alignment:
| Q |
114 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggc |
172 |
Q |
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| T |
9947862 |
aacaccaacttgtttgggataacactgacatgaaaccctttgataggagtaatgttggc |
9947920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 8958694 - 8958637
Alignment:
| Q |
99 |
tcatttttctccttaaacaccaacttgtttgggataacactaacatggaacccttcaa |
156 |
Q |
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| T |
8958694 |
tcattcttctcattgaataccaacttgtttgggataacactgacatggaacccttcaa |
8958637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 8945391 - 8945503
Alignment:
| Q |
114 |
aacaccaacttgtttgggataacactaacatggaacccttcaataggtgtaatgttggctacgtagatggttggttcctctccaacattggttactgttc |
213 |
Q |
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|||| |||||| ||||||||| |||||||| || | ||||||| ||| ||||| | || || || |||| | || |||| ||||||||||| ||||||| |
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| T |
8945391 |
aacatcaacttatttgggatagcactaacacggtatccttcaacaggcataatgctagcaacataaatggcttgtccctcaccaacattggtaactgttc |
8945490 |
T |
|
| Q |
214 |
tttgaaattcttg |
226 |
Q |
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| ||||||||||| |
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| T |
8945491 |
tgtgaaattcttg |
8945503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 8975089 - 8975049
Alignment:
| Q |
114 |
aacaccaacttgtttgggataacactaacatggaacccttc |
154 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
8975089 |
aacaccaacttatttgggataactctaacatggaacccttc |
8975049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 25927947 - 25927991
Alignment:
| Q |
99 |
tcatttttctccttaaacaccaacttgtttgggataacactaaca |
143 |
Q |
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||||| ||||| |||||||| |||||||||||||||||||||||| |
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| T |
25927947 |
tcattcttctcattaaacactaacttgtttgggataacactaaca |
25927991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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