View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_36 (Length: 248)
Name: NF10098_low_36
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_36 |
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| [»] scaffold0564 (1 HSPs) |
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Alignment Details
Target: scaffold0564 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 10681 - 10493
Alignment:
| Q |
47 |
attaacgtaagttgaaactcatgtccttcaataaaagcttgttacaaggttctggaatgcaatgttaatagttaaacagcacagtgtgatgatgacatgt |
146 |
Q |
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| T |
10681 |
attaacgtaagttgaaactcatgtccttcaataaaagcttgttacaaggttctggaatgcaatgttaatagttaaacagcatagtgtgatgatgacatgt |
10582 |
T |
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| Q |
147 |
gcagagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcct |
235 |
Q |
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| T |
10581 |
gcagagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcct |
10493 |
T |
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Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 39489891 - 39489705
Alignment:
| Q |
47 |
attaacgtaagttgaaactcatgtccttcaataaaagcttgttacaaggttctggaatgcaatgttaatagttaaacagcacagtgtgatgatgacatgt |
146 |
Q |
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| T |
39489891 |
attaacgtaagttgaaactcatgtccttcaataaaagcttgttacaaagttctggaatgcaatgt--atagttaaacagcatagtgtgatgatgacatgt |
39489794 |
T |
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| Q |
147 |
gcagagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcct |
235 |
Q |
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| T |
39489793 |
gcaaagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcct |
39489705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 47 - 235
Target Start/End: Original strand, 12749146 - 12749332
Alignment:
| Q |
47 |
attaacgtaagttgaaactcatgtccttcaataaaagcttgttacaaggttctggaatgcaatgttaatagttaaacagcacagtgtgatgatgacatgt |
146 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
12749146 |
attaacgtaagttgaaactcatgtccttcaataaaagcttgttacaaagttctggaatgcaatgt--atagttaaacagcatagtgtgatgatgacatgt |
12749243 |
T |
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| Q |
147 |
gcagagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcct |
235 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12749244 |
gcaaagaagtcagtactgtatctcctaactcctattattctgtttgactattatgatactaagatattgtgaattgttccggctagcct |
12749332 |
T |
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