View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10098_low_4 (Length: 489)

Name: NF10098_low_4
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10098_low_4
NF10098_low_4
[»] chr5 (8 HSPs)
chr5 (18-480)||(36767664-36768114)
chr5 (255-480)||(33404289-33404515)
chr5 (241-407)||(42897374-42897543)
chr5 (271-407)||(2970697-2970834)
chr5 (241-407)||(36982317-36982486)
chr5 (241-407)||(14044187-14044355)
chr5 (239-355)||(5712601-5712718)
chr5 (271-302)||(36006844-36006875)
[»] chr2 (19 HSPs)
chr2 (241-480)||(31921621-31921861)
chr2 (239-403)||(8381314-8381481)
chr2 (241-407)||(29194119-29194288)
chr2 (274-411)||(43377242-43377379)
chr2 (241-407)||(2110351-2110520)
chr2 (241-407)||(28585683-28585852)
chr2 (241-407)||(43370805-43370974)
chr2 (275-399)||(16970295-16970419)
chr2 (240-407)||(45080419-45080587)
chr2 (241-372)||(25898749-25898880)
chr2 (242-407)||(1779073-1779241)
chr2 (271-407)||(9370505-9370643)
chr2 (246-407)||(4828094-4828258)
chr2 (271-410)||(42846942-42847079)
chr2 (271-371)||(39646335-39646437)
chr2 (241-344)||(30422588-30422692)
chr2 (346-410)||(39646435-39646498)
chr2 (271-328)||(27922609-27922666)
chr2 (271-313)||(9472539-9472581)
[»] chr3 (10 HSPs)
chr3 (241-480)||(30462728-30462967)
chr3 (239-407)||(40496904-40497075)
chr3 (240-407)||(50676605-50676774)
chr3 (240-407)||(41346178-41346348)
chr3 (241-407)||(51545793-51545962)
chr3 (241-407)||(48169855-48170024)
chr3 (241-407)||(54014368-54014537)
chr3 (271-407)||(24709141-24709279)
chr3 (271-407)||(48737657-48737795)
chr3 (241-403)||(13542792-13542957)
[»] chr7 (17 HSPs)
chr7 (241-480)||(22338028-22338268)
chr7 (250-480)||(22619810-22620041)
chr7 (241-407)||(4041078-4041247)
chr7 (241-407)||(40232115-40232284)
chr7 (241-407)||(25943649-25943816)
chr7 (241-407)||(6392402-6392571)
chr7 (241-407)||(27596086-27596255)
chr7 (252-407)||(29737536-29737694)
chr7 (249-407)||(31689361-31689522)
chr7 (274-410)||(21442834-21442970)
chr7 (241-407)||(41427648-41427817)
chr7 (283-407)||(38276588-38276714)
chr7 (302-410)||(48838188-48838296)
chr7 (271-407)||(24300185-24300313)
chr7 (241-297)||(7380535-7380592)
chr7 (276-320)||(1643271-1643315)
chr7 (275-319)||(2849366-2849410)
[»] chr8 (12 HSPs)
chr8 (241-434)||(11147755-11147949)
chr8 (241-410)||(9753898-9754069)
chr8 (241-407)||(39907039-39907208)
chr8 (241-407)||(18575159-18575328)
chr8 (271-410)||(13243578-13243718)
chr8 (241-407)||(11254631-11254800)
chr8 (241-407)||(17493657-17493826)
chr8 (271-407)||(12738397-12738535)
chr8 (241-403)||(27820908-27821073)
chr8 (244-407)||(38069898-38070064)
chr8 (271-407)||(17336002-17336139)
chr8 (274-319)||(29638412-29638457)
[»] chr4 (24 HSPs)
chr4 (242-480)||(28689666-28689910)
chr4 (241-410)||(3172020-3172191)
chr4 (277-410)||(28910195-28910328)
chr4 (241-407)||(39788124-39788293)
chr4 (241-407)||(47199617-47199786)
chr4 (241-407)||(40071449-40071618)
chr4 (241-407)||(54438157-54438326)
chr4 (239-407)||(20789804-20789974)
chr4 (244-407)||(33800786-33800952)
chr4 (241-407)||(925136-925305)
chr4 (241-407)||(17493884-17494053)
chr4 (241-407)||(37064753-37064922)
chr4 (271-407)||(32217968-32218106)
chr4 (271-410)||(46870735-46870874)
chr4 (271-407)||(21240457-21240595)
chr4 (275-410)||(41555590-41555720)
chr4 (241-407)||(34408657-34408826)
chr4 (241-355)||(10441518-10441631)
chr4 (271-407)||(52101179-52101317)
chr4 (271-403)||(53509673-53509807)
chr4 (241-378)||(51744519-51744659)
chr4 (276-319)||(48400584-48400627)
chr4 (276-313)||(39052854-39052891)
chr4 (275-319)||(29550679-29550723)
[»] chr1 (17 HSPs)
chr1 (241-410)||(40562436-40562606)
chr1 (244-407)||(39150900-39151066)
chr1 (241-407)||(50777128-50777297)
chr1 (241-407)||(46862687-46862856)
chr1 (245-407)||(46371057-46371217)
chr1 (241-410)||(9129401-9129574)
chr1 (241-407)||(28036700-28036870)
chr1 (241-407)||(32045964-32046133)
chr1 (240-407)||(38321776-38321942)
chr1 (243-407)||(8229194-8229362)
chr1 (241-407)||(1207452-1207621)
chr1 (241-407)||(1929217-1929385)
chr1 (323-410)||(38817902-38817988)
chr1 (276-319)||(43895957-43896000)
chr1 (271-319)||(9590625-9590673)
chr1 (271-319)||(31634244-31634292)
chr1 (271-319)||(36326154-36326202)
[»] scaffold0047 (1 HSPs)
scaffold0047 (241-407)||(69884-70053)
[»] scaffold0061 (1 HSPs)
scaffold0061 (241-407)||(10017-10186)
[»] chr6 (13 HSPs)
chr6 (250-407)||(29182722-29182882)
chr6 (277-407)||(30736550-30736682)
chr6 (240-407)||(12350403-12350573)
chr6 (240-407)||(28541586-28541756)
chr6 (241-407)||(16435910-16436075)
chr6 (271-410)||(1870662-1870800)
chr6 (271-407)||(7271109-7271247)
chr6 (271-410)||(13210472-13210610)
chr6 (243-407)||(13042103-13042268)
chr6 (240-407)||(1241240-1241409)
chr6 (271-407)||(31013526-31013664)
chr6 (271-403)||(31833622-31833751)
chr6 (274-381)||(17510202-17510309)
[»] scaffold0016 (1 HSPs)
scaffold0016 (241-407)||(92169-92338)
[»] scaffold0519 (1 HSPs)
scaffold0519 (241-407)||(10593-10762)
[»] scaffold0532 (1 HSPs)
scaffold0532 (241-407)||(3945-4114)
[»] scaffold1194 (1 HSPs)
scaffold1194 (271-381)||(1127-1236)
[»] scaffold0318 (2 HSPs)
scaffold0318 (244-322)||(16562-16641)
scaffold0318 (362-407)||(16488-16533)
[»] scaffold0685 (1 HSPs)
scaffold0685 (275-320)||(6352-6397)
[»] scaffold0250 (1 HSPs)
scaffold0250 (274-319)||(20566-20611)


Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 36767664 - 36768114
Alignment:
Q  18 gtttagatatgccatcttctctttactttgattgattataaggtgtttttagtcatgtaatatctttgacattcaacatggaaaaatttgaactccacgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36767664 gtttagatatgccatcttctctttactttgattgattataaggtgtttttagtcatgtaatatctttgacattcaacatggaaaaatttgaactccacgc 36767763  T
Q  118 atgtttggagacacgagcatcattagctggaacaggaacagctgaggtttagggagcatgtgtggagttcctagtttaaactacctagtttgatatcata 217  Q
    |||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36767764 atgtttggagacacgagcatcattagctggaacag------ctgaggtttagggagcatgtgtggagttcctagtttaaactacctagtttgatatcata 36767857  T
Q  218 agatgaattgcttaattgtactgtactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaag 316  Q
    |||||||||| |||||||||||     || ||| |||||||||||||||  |||| ||||| |||||||||||||| || | ||||||||||||||||||    
T  36767858 agatgaattgtttaattgtact-----ccgtccctccctgaataagtgacctatttgaccacttcacacagattaaaaagagtgtaaagatgaaagaaag 36767952  T
Q  317 agagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaac 416  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36767953 agagtgatatttttactgaattgcccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaatttttactgcaac 36768052  T
Q  417 caattaataaactttgctctacatgccaaagctacgtaactatcagataccaatatgcctatgc 480  Q
    |||| ||||| ||||||||||||||||||||||||||  || ||| ||||||||||||||||||    
T  36768053 caatgaataacctttgctctacatgccaaagctacgt--ctctcatataccaatatgcctatgc 36768114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 255 - 480
Target Start/End: Complemental strand, 33404515 - 33404289
Alignment:
Q  255 ctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatt 353  Q
    ||||||||||||  || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33404515 ctgaataagtgacctacttgatcattttacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgcccttattattatt 33404416  T
Q  354 tttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctacatgccaaagctacgt 453  Q
    |||||||||| ||||||||||||| ||||||||  |||||||||||||||| |||||| |||||||| ||||||||||||| |||||| ||||||||| |    
T  33404415 tttaaacctttacttttaaataataattactttaattgttccactacaaacatttacttcaaccaatgaataaactttgctttacatggcaaagctacat 33404316  T
Q  454 aactatcagataccaatatgcctatgc 480  Q
      || ||||||| ||||||||||||||    
T  33404315 tgctgtcagatagcaatatgcctatgc 33404289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 42897374 - 42897543
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  42897374 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 42897473  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  42897474 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 42897543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 2970697 - 2970834
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatt-attatttttaaaccttcacttt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||| || |||||||| |||||||||||||    
T  2970697 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagataatgatattttcactgaattgcccttgttaattattttgaaaccttcacttt 2970796  T
Q  370 taaataatgattactttctttgttccactacaaacttt 407  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  2970797 taagtaatgattactttctttgttccactacaaacttt 2970834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 36982486 - 36982317
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||    
T  36982486 tactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 36982387  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  36982386 cccttgtcattattttgaaactttttcacttttaagtaatgattattttatttgttccactacaaacttt 36982317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 14044355 - 14044187
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| || ||||||||||  |||||||||| ||||||||||||||||||||||||||| ||| ||| | |||    
T  14044355 tactccctccgtccctgaataagtgacctatttgatcatttcacacgtattaagaaaagtgtaaagatgaaagaaagagagtgatacttt-actaagttg 14044257  T
Q  340 tccttattattatttttaaacctt--cacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| |||| ||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  14044256 cccttgtcattattttgaaactttttcacttttaaataatgattactttatttgttccactacaaacttt 14044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 5712718 - 5712601
Alignment:
Q  239 tgtactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaat 337  Q
    |||||||||||||||||||||||| |||  || ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  5712718 tgtactccctccgtccctgaataaatgacctacttgaccattccacacagattaagaaaaatgtaaagatgaaagaaagaaagtgatattttttctgaat 5712619  T
Q  338 tgtccttattattatttt 355  Q
    || |||||||||||||||    
T  5712618 tgcccttattattatttt 5712601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 302
Target Start/End: Original strand, 36006844 - 36006875
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgta 302  Q
    ||||||||||||||||||||||||||||||||    
T  36006844 ttgaccatttcacacagattaagaaaaatgta 36006875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 241 - 480
Target Start/End: Original strand, 31921621 - 31921861
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  31921621 tactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactaaattg 31921720  T
Q  340 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctaca 439  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||| |||||||| |||||||| ||||||||||||||||||    
T  31921721 cccttattattatttttaaaccttcacttttaaataataattactttaattgttccactacaagcttttactacaaccaatgaataaactttgctctaca 31921820  T
Q  440 tgccaaagctacgtaactatcagataccaatatgcctatgc 480  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  31921821 tgccaaagctacgtagctatcagataccaatatgcctatgc 31921861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 239 - 403
Target Start/End: Original strand, 8381314 - 8381481
Alignment:
Q  239 tgtactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaat 337  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |    
T  8381314 tgtactccctccgtccctgaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaatagagtgatacttttactgagt 8381413  T
Q  338 tgtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaa 403  Q
    || |||| | |||||||| ||||   |||| |||||| ||||||||||||||||||||||||||||||    
T  8381414 tgcccttgtcattattttgaaactttttcatttttaagtaatgattactttctttgttccactacaaa 8381481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 29194288 - 29194119
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  29194288 tactccctccgtccctgaataagtgacctatttgaccatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 29194189  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  29194188 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 29194119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 274 - 411
Target Start/End: Original strand, 43377242 - 43377379
Alignment:
Q  274 accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaa 373  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||| | ||||| |||||||||||||| ||| |||||||||| ||||||||||||||||     
T  43377242 accatttcaaacaaattaagaaaagtgtaaagatgaaagaaagaaaatgatacttttactgaattgtacttgttattattttgaaaccttcacttttaag 43377341  T
Q  374 taatgattactttctttgttccactacaaacttttact 411  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43377342 taatgattactttctttgttccactacaaacttttact 43377379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 2110520 - 2110351
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||| |||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  2110520 tactccttccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 2110421  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  2110420 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaacttt 2110351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 28585683 - 28585852
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||| ||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  28585683 tactccatccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 28585782  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  28585783 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 28585852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 43370974 - 43370805
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||| |||    
T  43370974 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttg 43370875  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  43370874 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 43370805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 275 - 399
Target Start/End: Complemental strand, 16970419 - 16970295
Alignment:
Q  275 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaat 374  Q
    |||||||||||| |||||||||| ||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  16970419 ccatttcacacatattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttattattatttttaaaccttcacttttaagt 16970320  T
Q  375 aatgattactttctttgttccacta 399  Q
    ||||||||||||||||||| |||||    
T  16970319 aatgattactttctttgtttcacta 16970295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 240 - 407
Target Start/End: Original strand, 45080419 - 45080587
Alignment:
Q  240 gtactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaatt 338  Q
    |||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||| ||    
T  45080419 gtactccctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaa--agagtgatacttttactgagtt 45080516  T
Q  339 gtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    | |||||| ||||| || ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  45080517 gcccttatcattatgttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 45080587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 241 - 372
Target Start/End: Complemental strand, 25898880 - 25898749
Alignment:
Q  241 tactccctccgtccctgaataagtgatttattgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgt 340  Q
    |||||||||||| ||||||||||||| |  ||||||||||||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||||     
T  25898880 tactccctccgttcctgaataagtgactacttgaccatttcacacagattaagaagagtgtaaagatgaaagaaaaaaagtgatatttttactgaattgc 25898781  T
Q  341 ccttattattatttttaaaccttcacttttaa 372  Q
    ||||||||||||||||||| |||| |||||||    
T  25898780 ccttattattatttttaaatcttcgcttttaa 25898749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 242 - 407
Target Start/End: Original strand, 1779073 - 1779241
Alignment:
Q  242 actccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgt 340  Q
    ||||| ||||||||| ||||  ||| ||| |||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  1779073 actccttccgtccctcaatacttgacttacttgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattgt 1779172  T
Q  341 ccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    | || | |||||||| ||||   ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  1779173 ctttgtcattattttgaaactttttcacttttaagtaatgattactttctttattccactacaaacttt 1779241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 9370643 - 9370505
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 368  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||| | |||| ||||||||||||||||||| | |||||||| ||||   |||||||    
T  9370643 ttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaagaaaatgatttttttactgaattgtccttgtcattattttgaaactttttcactt 9370544  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  9370543 ttaagtaatgattactttctttgtttcactacaaacttt 9370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 246 - 407
Target Start/End: Original strand, 4828094 - 4828258
Alignment:
Q  246 cctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcctt 344  Q
    ||||||| ||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||| ||| ||||    
T  4828094 cctccgttccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaaaagagtgatacttttactgagttgccctt 4828193  T
Q  345 attattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     | |||||||| ||||   ||||||||||| |||||||||||||||||||||||||| |||||||    
T  4828194 gtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactataaacttt 4828258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 271 - 410
Target Start/End: Original strand, 42846942 - 42847079
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 370  Q
    ||||||||||||||||||||| ||||  || ||| ||||||||  |||| ||||||||||||| |||||||||| |||||||||| ||| ||||||||||    
T  42846942 ttgaccatttcacacagattatgaaaggtgcaaaaatgaaaga--gagaatgatatttttactaaattgtccttgttattattttgaaatcttcactttt 42847039  T
Q  371 aaataatgattactttctttgttccactacaaacttttac 410  Q
    || ||||||||| ||||||||||||| |||||||||||||    
T  42847040 aagtaatgattattttctttgttccattacaaacttttac 42847079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 39646335 - 39646437
Alignment:
Q  271 ttgaccatttcacacagattaagaaaa--atgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactt 368  Q
    |||||||||||| ||||||||||||||  ||||||| |||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  39646335 ttgaccatttcatacagattaagaaaaaaatgtaaaaatgaaagaaagagaatgatatttttactgaattgcccttgttattattttgaaaccttcactt 39646434  T
Q  369 tta 371  Q
    |||    
T  39646435 tta 39646437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 30422692 - 30422588
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||| ||||||||||||  |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||    
T  30422692 tactccctccgtcgctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaacgatgaaagaaagagagtgatacttttactgagttg 30422593  T
Q  340 tcctt 344  Q
     ||||    
T  30422592 ccctt 30422588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 39646435 - 39646498
Alignment:
Q  346 ttattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 410  Q
    |||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  39646435 ttattattttgaaaccttcacttttaagtaatgattacttt-tttgttccactacaaacttttac 39646498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 27922609 - 27922666
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatattt 328  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  27922609 ttgatcatttcacacatattaagaaaagtgtaaagatgaaagaaagagaatgatattt 27922666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 313
Target Start/End: Complemental strand, 9472581 - 9472539
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaaga 313  Q
    |||||||||||||||| ||||||||||||||| | ||||||||    
T  9472581 ttgaccatttcacacatattaagaaaaatgtataaatgaaaga 9472539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 241 - 480
Target Start/End: Complemental strand, 30462967 - 30462728
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  30462967 tactccatccgtccc-gaataagtgatctacttgaccatttcacacagattaagaaaagtataaagatgaaagaaatagagtgatatttttactgaattg 30462869  T
Q  340 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctaca 439  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30462868 cccttattattatttttaaaccttcacttttaaataataattactttaattgttccactacaaacttttactgcaaccaatgaataaactttgctctaca 30462769  T
Q  440 tgccaaagctacgtaactatcagataccaatatgcctatgc 480  Q
    || |||||||||||| || | ||||||||||||||||||||    
T  30462768 tggcaaagctacgtagctgttagataccaatatgcctatgc 30462728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 239 - 407
Target Start/End: Complemental strand, 40497075 - 40496904
Alignment:
Q  239 tgtactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaat 337  Q
    |||||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |    
T  40497075 tgtactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagt 40496976  T
Q  338 tgtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    || |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  40496975 tgcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 40496904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 50676774 - 50676605
Alignment:
Q  240 gtactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaatt 338  Q
    ||||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||    
T  50676774 gtactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagtt 50676675  T
Q  339 gtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    | |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  50676674 g-ccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 50676605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 41346348 - 41346178
Alignment:
Q  240 gtactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaatt 338  Q
    |||||||||||||||||||||||||||  |||| ||| ||||||||||||||||||||| ||||||||||||||||||  ||||||| ||||||||| ||    
T  41346348 gtactccctccgtccctgaataagtgacatatttgactatttcacacagattaagaaaagtgtaaagatgaaagaaagtaagtgatacttttactgagtt 41346249  T
Q  339 gtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    | |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  41346248 gcccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 41346178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 51545962 - 51545793
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||| ||||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  51545962 tactctctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 51545863  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  51545862 cccttgtcattattttgaaactttttcacttttaagtaatgattactttttttgttccactacaaacttt 51545793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 48170024 - 48169855
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||  ||    
T  48170024 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatactattactgagctg 48169925  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  48169924 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 48169855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 54014537 - 54014368
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||| |||||| ||||||| |  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  54014537 tactccctctgtcccttaataagtaacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 54014438  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||||| |||||||| ||||   ||||||||||| |||| |||||||||||||||||||||||||||||    
T  54014437 cccttatcattattttgaaactttttcacttttaagtaataattactttctttgttccactacaaacttt 54014368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 24709279 - 24709141
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaa--ccttcactt 368  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||| | |||||||| |||    |||||||    
T  24709279 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtcattattttgaaattttttcactt 24709180  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  24709179 ttaagtaatgattactttctttgtttcactacaaacttt 24709141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 48737795 - 48737657
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 368  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||||||||| |||| | |||||||| ||||   |||||||    
T  48737795 ttgacaatttcacacagattaagaaaagtgtagagatgaaagaaagaaaatgatatttttactgaattgcccttgtcattattttgaaactttttcactt 48737696  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  48737695 ttaagtaatgattattttctttgttccactacaaacttt 48737657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 241 - 403
Target Start/End: Original strand, 13542792 - 13542957
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||| |||||||||||||||||||  |||| |||||||||| | |||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||    
T  13542792 tactccatccgtccctgaataagtgacctatttgaccatttcatatagattaagaaaagtgtaaagatgaaagaaagagattgatacttttactgagttg 13542891  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaa 403  Q
     |||| | |||||||| ||||   ||||||||||| |||||||||||||||||||| | |||||||    
T  13542892 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgtttcgctacaaa 13542957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 165; Significance: 5e-88; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 241 - 480
Target Start/End: Complemental strand, 22338268 - 22338028
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||  || || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22338268 tactccctccgtccctaaataagtgacctacttaaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttactgaattg 22338169  T
Q  340 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctaca 439  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||   | ||||||||||||||||||||||||||||| ||||||||||| | ||||    
T  22338168 cccttattattatttttaaaccttcacttttaaataataattactttaaatattccactacaaacttttactgcaaccaatgaataaactttgttataca 22338069  T
Q  440 tgccaaagctacgtaactatcagataccaatatgcctatgc 480  Q
    |||||||| |||||| || ||||||||||||||||||||||    
T  22338068 tgccaaagttacgtagctgtcagataccaatatgcctatgc 22338028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 250 - 480
Target Start/End: Complemental strand, 22620041 - 22619810
Alignment:
Q  250 cgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatta 348  Q
    |||||||||||||||||  || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||||||    
T  22620041 cgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgaattgcctttatta 22619942  T
Q  349 ttatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgctctacatgccaaagc 448  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22619941 ttatttttaaaccttcacttttaaataataattactttaattgttccactacaaacttttactgcaaccaatgaataaactttgctctacatgccaaagc 22619842  T
Q  449 tacgtaactatcagataccaatatgcctatgc 480  Q
    |||||| || ||||||| |||||||| |||||    
T  22619841 tacgtagctgtcagatatcaatatgcatatgc 22619810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 4041247 - 4041078
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |||    
T  4041247 tactccctccgtcccttaataagtgacatatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagggagtgatacttttactgagttg 4041148  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    ||||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  4041147 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 4041078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 40232115 - 40232284
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  40232115 tactccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 40232214  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  40232215 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 40232284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 25943649 - 25943816
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| || |||||||||  ||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  25943649 tactccctccgtccctgaataagtgacctatttgatcatttcaca--gattaagaaaattgtaaagatgaaagaaagagagtgatacttttactgaattg 25943746  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     | || | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  25943747 ccattgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 25943816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 6392571 - 6392402
Alignment:
Q  241 tactccctccgtccctgaataagtgatttattg-accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||| |||||||||||  ||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||    
T  6392571 tactccctccgtccttgaataagtgacatattttaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 6392472  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6392471 cccttgtcattattttgaaactttttcacttttaagtaatgattaatttctttgttccactacaaacttt 6392402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 27596086 - 27596255
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||  |||    
T  27596086 tactccctccgtccctaaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggttg 27596185  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| |||||||||| |||||||||||||    
T  27596186 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgtttcactacaaacttt 27596255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 252 - 407
Target Start/End: Complemental strand, 29737694 - 29737536
Alignment:
Q  252 tccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattatt 350  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||| ||| |||| | |||    
T  29737694 tcccttaataagtgacttatttgaccatttcacacagattaagaaaagtgtaaaaataaaagaaagagagtgatacttttactgagttgcccttgtcatt 29737595  T
Q  351 atttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    ||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  29737594 attttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 29737536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 249 - 407
Target Start/End: Original strand, 31689361 - 31689522
Alignment:
Q  249 ccgtccctgaataagtgatttattg-accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatt 347  Q
    |||||||| |||||||||  ||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||| |     
T  31689361 ccgtccctaaataagtgacatatttcaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttgcccttgtc 31689460  T
Q  348 attatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||||||| ||||   |||||||||||| ||||||||||||||||||| ||||| |||||||    
T  31689461 attattttgaaactttttcacttttaaaaaatgattactttctttgtttcactataaacttt 31689522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 274 - 410
Target Start/End: Original strand, 21442834 - 21442970
Alignment:
Q  274 accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaa 373  Q
    ||||||||| |||||||||||||| ||||||||||||| ||| ||| ||||||||||||| ||||| |||| |||||||||| |||| |||||||||||     
T  21442834 accatttcatacagattaagaaaagtgtaaagatgaaaaaaatagaatgatatttttactaaattgcccttgttattattttgaaactttcacttttaag 21442933  T
Q  374 taatgattactttctttgttccactacaaacttttac 410  Q
    ||||| ||||||||||| ||||||| |||||||||||    
T  21442934 taatggttactttctttattccactgcaaacttttac 21442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 41427648 - 41427817
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||| || ||||| || | |||| || ||||||||||||||||| |||| ||||||||||||||||||||||| ||| ||||| |||||||    
T  41427648 tactccctccgtctctaaataaatggtctatttgatcatttcacacagattaaaaaaagtgtaaagatgaaagaaagagagtaatacttttattgaattg 41427747  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| |||||||||||||||||||| |||||||||||||    
T  41427748 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgtttcactacaaacttt 41427817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 283 - 407
Target Start/End: Original strand, 38276588 - 38276714
Alignment:
Q  283 cacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcacttttaaataatgat 380  Q
    |||||||||||||||  |||||||||||||||||||| |||| |||||||||||||| |||| | |||||||| ||||   ||||||||||| |||||||    
T  38276588 cacagattaagaaaagagtaaagatgaaagaaagagaatgatgtttttactgaattgcccttgtcattattttgaaactttttcacttttaagtaatgat 38276687  T
Q  381 tactttctttgttccactacaaacttt 407  Q
    |||||||||||||||||||||||||||    
T  38276688 tactttctttgttccactacaaacttt 38276714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 302 - 410
Target Start/End: Complemental strand, 48838296 - 48838188
Alignment:
Q  302 aaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactaca 401  Q
    |||||| ||||||||| | ||||||||||||| |||||||||| |||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||    
T  48838296 aaagataaaagaaagaaaatgatatttttactaaattgtccttgttattattttaaaactttcacttttaagtaatgattactttctttgttccactaca 48838197  T
Q  402 aacttttac 410  Q
     ||||||||    
T  48838196 cacttttac 48838188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 24300185 - 24300313
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 370  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| |||| | |  | |||      |||||||||    
T  24300185 ttgaccatttcacacagattaagaaaagtgtgaagatgaaagaaagagagtgatacttttactgagttgcccttgtaa--acttt------ttcactttt 24300276  T
Q  371 aaataatgattactttctttgttccactacaaacttt 407  Q
    || |||||||||||||||||||| |||||||||||||    
T  24300277 aagtaatgattactttctttgtttcactacaaacttt 24300313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 7380535 - 7380592
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaa 297  Q
    |||| ||||||||  |||||||||||| || |||||||||||||||||||||| ||||    
T  7380535 tacttcctccgtctttgaataagtgatctacttgaccatttcacacagattaaaaaaa 7380592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 320
Target Start/End: Original strand, 1643271 - 1643315
Alignment:
Q  276 catttcacacagattaagaaaaatgtaaagatgaaagaaagagag 320  Q
    ||||||||||| ||||||||||||||| | |||||||| ||||||    
T  1643271 catttcacacatattaagaaaaatgtataaatgaaagagagagag 1643315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 2849410 - 2849366
Alignment:
Q  275 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 319  Q
    |||||||||||| ||||||||||||||| | |||||||| |||||    
T  2849410 ccatttcacacatattaagaaaaatgtataaatgaaagagagaga 2849366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 241 - 434
Target Start/End: Complemental strand, 11147949 - 11147755
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  || |||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  11147949 tactccctccgtccctgaataagtgacctacttgatcatttcacacagattaagaaaagtgtaaagatgaaaggaagagaatgatatttttactgaattg 11147850  T
Q  340 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaataaactttgct 434  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  11147849 cccttattattatttttaaaccttcacttttaaataataattactttaattgttccactacaaacttttactgcaaccaataaataaactttgct 11147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 241 - 410
Target Start/End: Complemental strand, 9754069 - 9753898
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| ||||  |||  || ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  9754069 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagataatgatatttttactgaattg 9753970  T
Q  340 tccttatt-attatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 410  Q
    ||||| || |||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  9753969 tccttgttaattattttgaaaccttcacttttaagtaatgattactttctttgtttcactacaaacttttac 9753898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 39907208 - 39907039
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  39907208 tactccctccgtcccttaataagtgacttatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39907109  T
Q  340 tccttattattatttttaaa--ccttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||||| |||||||| |||    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  39907108 cccttatcattattttgaaattttttcacttttaagtaatgattactttctttgttccactacaaacttt 39907039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 18575328 - 18575159
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  18575328 tactccctccgtccctgaataagtgacctatttgatcatttcacacaaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 18575229  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  18575228 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 18575159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 271 - 410
Target Start/End: Original strand, 13243578 - 13243718
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatt-attatttttaaaccttcacttt 369  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||| || |||||||| ||||||||| |||    
T  13243578 ttgaccatttcacaccgattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgtccttgttaattattttgaaaccttcatttt 13243677  T
Q  370 taaataatgattactttctttgttccactacaaacttttac 410  Q
    ||| ||||||||| |||||||||||||||||||||||||||    
T  13243678 taagtaatgattattttctttgttccactacaaacttttac 13243718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 11254800 - 11254631
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| ||||||| |||| | |||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  11254800 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 11254701  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  11254700 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 11254631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 17493826 - 17493657
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | |||    
T  17493826 tactccctccgtccctgaataagtgacctatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactaagttg 17493727  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   |||| |||||| ||||||||||||| ||||||||||||||||||||    
T  17493726 cccttgtcattattttgaaactttttcatttttaagtaatgattactttatttgttccactacaaacttt 17493657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 12738397 - 12738535
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 368  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||| |||| | |||||||| ||||   |||||||    
T  12738397 ttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagataatgatatttttactgaattgcccttgtcattattttgaaactttttcactt 12738496  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  12738497 ttaagtaatgattactttctttgttccactacaaacttt 12738535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 241 - 403
Target Start/End: Complemental strand, 27821073 - 27820908
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||| ||||| | |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  27821073 tactcccttcgtcctttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 27820974  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaa 403  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||    
T  27820973 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaa 27820908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 244 - 407
Target Start/End: Original strand, 38069898 - 38070064
Alignment:
Q  244 tccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcc 342  Q
    ||||||||||| |||| ||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| ||| ||    
T  38069898 tccctccgtccttgaacaagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagatagtgatacttttactgagttgccc 38069997  T
Q  343 ttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    || | |||||||| ||||   |||| |||||| ||||||||| ||||||||||||||||||||||||    
T  38069998 ttgtcattattttgaaactttttcatttttaagtaatgattattttctttgttccactacaaacttt 38070064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 17336002 - 17336139
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 368  Q
    ||||| |||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||| ||||   |||||||    
T  17336002 ttgacaatttcacataaattaagaaaa-tgtaaagatgaaagaaagagaatgatatttttactgaactgtccttgtcattattttgaaactttttcactt 17336100  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| |||||||||||||| ||||||||||| |||||||    
T  17336101 ttaagtaatgattactttcgttgttccactagaaacttt 17336139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 29638457 - 29638412
Alignment:
Q  274 accatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 319  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||    
T  29638457 accatttcacacagattaagaaaagtgtataaatgaaagaaagaga 29638412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 242 - 480
Target Start/End: Original strand, 28689666 - 28689910
Alignment:
Q  242 actccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgt 340  Q
    |||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||  ||| | ||  |||||||||||||||||     
T  28689666 actccctctgtccctgaataagtgatctatttgactatttcacacagattaagaaaaatgtaaagatgaagaaaaaaaag--atatttttactgaattgc 28689763  T
Q  341 ccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttactgcaaccaattaat-aaactttgctctaca 439  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  28689764 ccttattattatttttaaaccttca-ttttaaataataattactttaattgttccactacaaacttttactgcaaccaatgaataaaactttgctataca 28689862  T
Q  440 tgccaaagctacgt-------aactatcagataccaatatgcctatgc 480  Q
    ||||||||||||||       | |||||||||||||||||||||||||    
T  28689863 tgccaaagctacgtagctgtcagctatcagataccaatatgcctatgc 28689910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 241 - 410
Target Start/End: Original strand, 3172020 - 3172191
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||| ||||||| ||||  |||| || ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||    
T  3172020 tactcccttcgtccctcaatacttgatctacttgaccatttcacacagattaagaaaaatgtaaagatgaaaaaaagataatgatatttttactgaattg 3172119  T
Q  340 tccttatt-attatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 410  Q
    ||||| || |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3172120 tccttgttaattattttgaaaccttcacttttaagtaatgattactttctttgttccactacaaacttttac 3172191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 277 - 410
Target Start/End: Original strand, 28910195 - 28910328
Alignment:
Q  277 atttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaataa 376  Q
    |||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |||    
T  28910195 atttcacatagattaagaaaaatgcaaagatgaaagaaagagaatgatatttttactgaattgtccttgttattattttgaaaccttcacttttaagtaa 28910294  T
Q  377 tgattactttctttgttccactacaaacttttac 410  Q
    ||||||||||||||||||||||| ||||||||||    
T  28910295 tgattactttctttgttccactagaaacttttac 28910328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 39788293 - 39788124
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||| |||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  39788293 tactcccttcgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 39788194  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  39788193 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 39788124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 47199786 - 47199617
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||    
T  47199786 tactccctccgtacctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatatttttattgagttg 47199687  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  47199686 cccttgtcattattttaaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 47199617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 40071449 - 40071618
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  40071449 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 40071548  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   |||||||||||  |||||||||||||||||||||||||||||||||    
T  40071549 cccttgtcattattttgaaactttttcacttttaagcaatgattactttctttgttccactacaaacttt 40071618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 54438157 - 54438326
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  54438157 tactccctccgtccctaaataagtgacctatttgaccatttcacaccgattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 54438256  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  54438257 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 54438326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 239 - 407
Target Start/End: Complemental strand, 20789974 - 20789804
Alignment:
Q  239 tgtactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaat 337  Q
    |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||      
T  20789974 tgtactccctccgttcctgaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagc 20789875  T
Q  338 tgtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    || |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  20789874 tg-ccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 20789804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 244 - 407
Target Start/End: Original strand, 33800786 - 33800952
Alignment:
Q  244 tccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcc 342  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||| ||| ||    
T  33800786 tccctccgtccctgaataagtgacctatttgaccatttcacacagattcagaaaagtgtaaagatggaagaaagagagtgatacttttactgagttgccc 33800885  T
Q  343 ttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    || | || ||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  33800886 ttgtcatcattttgaaactttttcacttttaaataatgattactttctttgttccactacaaacttt 33800952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 925136 - 925305
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| ||||||||| ||||| || |||||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||||||| |||    
T  925136 tactccctccgtcccttaataagtgacttatttgatcatttcacacagattaagaaaagtgtaaagataaaagaaataaagtgatacttttactgagttg 925235  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  925236 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 925305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 17494053 - 17493884
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||    
T  17494053 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttattgagttg 17493954  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| |||| |||| ||||||||||||||||||||||||    
T  17493953 cccttgtcattattttgaaactttttcacttttaagtaataattattttctttgttccactacaaacttt 17493884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 37064753 - 37064922
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||| |||||||||||||||||||  |||| || ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  37064753 tactccatccgtccctgaataagtgacctatttgatcatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 37064852  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | ||| |||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  37064853 cccttgtcatttttttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 37064922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 32217968 - 32218106
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 368  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||| |||||| | |||||||| ||||   |||||||    
T  32217968 ttgaccatttcacacagattaagaagagtgtaaagatgaaagaaagagaattatatttttactgaatagtccttgtcattattttgaaactttttcactt 32218067  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  32218068 ttaagtaatgattactttctttgttccactacaaacttt 32218106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 46870874 - 46870735
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 370  Q
    ||||| |||||||||| | ||| |||| || || ||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  46870874 ttgacaatttcacacatagtaaaaaaagtgcaaggatgaaagaaagagaatgatatttttactgaatagtccttgttattattttgaaaccttcactttt 46870775  T
Q  371 aaataatgattactttctttgttccactacaaacttttac 410  Q
    || ||||||| |||||||||||||||||||||||||||||    
T  46870774 aagtaatgatgactttctttgttccactacaaacttttac 46870735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 21240595 - 21240457
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 368  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| | || | | |||||| ||||   |||| ||    
T  21240595 ttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagagaatgatatttttactgaattgacattgtcactattttgaaactttttcattt 21240496  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  21240495 ttaagtaatgattactttctttgttccactacaaacttt 21240457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 275 - 410
Target Start/End: Complemental strand, 41555720 - 41555590
Alignment:
Q  275 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt--aa 372  Q
    ||||||||||||||||||||||| |||||||||||||||    || |||||||||||||||||||||   ||||||||||||||||||||||||||  ||    
T  41555720 ccatttcacacagattaagaaaagtgtaaagatgaaaga----gaatgatatttttactgaattgtc---attattatttttaaaccttcacttttttaa 41555628  T
Q  373 ataatgattactttctttgttccactacaaacttttac 410  Q
     |||||||||||||||||||| ||||||||||||||||    
T  41555627 gtaatgattactttctttgtttcactacaaacttttac 41555590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 34408657 - 34408826
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| | |||||||||||| |||| ||||| ||||||||||||||||||||| ||||| ||||| ||| |||    
T  34408657 tactccctccgtccctgaataagtgacctatttggccatttcacacatattaggaaaagtgtaaagatgaaagaaagagaatgatacttttattgagttg 34408756  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||  ||||||||||||    
T  34408757 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttatactacaaacttt 34408826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 241 - 355
Target Start/End: Complemental strand, 10441631 - 10441518
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  || |||||||||||||||||||||||| || ||||||||| ||||||  |||||||||||||||||||||||    
T  10441631 tactccctccgtccctgaataagtgacctacttgaccatttcacacagattaagataagtgtaaagataaaagaa--agagtgatatttttactgaattg 10441534  T
Q  340 tccttattattatttt 355  Q
     |||||||||||||||    
T  10441533 cccttattattatttt 10441518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 271 - 407
Target Start/End: Complemental strand, 52101317 - 52101179
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaa--ccttcactt 368  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||  ||| | |||||||| |||    |||||||    
T  52101317 ttgactatttcacacagattaagaaaagtgtaaagatgaaagaaatataatgatatttttactgaattgcacttgtcattattttgaaattttttcactt 52101218  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| ||||| ||| ||||||||||||||||||||||||    
T  52101217 ttaagtaatggttattttctttgttccactacaaacttt 52101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 271 - 403
Target Start/End: Original strand, 53509673 - 53509807
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 368  Q
    ||||| |||| ||||  |||| ||||| ||||||||||||||||| ||| ||||||| ||||||||||||| || | |||||||| ||||   |||||||    
T  53509673 ttgacaattttacacttattatgaaaagtgtaaagatgaaagaaaaagaatgatattgttactgaattgtcattgtcattattttgaaactttttcactt 53509772  T
Q  369 ttaaataatgattactttctttgttccactacaaa 403  Q
    |||||||||||||| ||||||||||||||||||||    
T  53509773 ttaaataatgattattttctttgttccactacaaa 53509807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 378
Target Start/End: Original strand, 51744519 - 51744659
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||| ||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||  ||||||||||||||| ||||||| | |||    
T  51744519 tactctctccgtccctgaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgtgagaaagagagtgatacttttactaagttg 51744618  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatg 378  Q
     |||| | |||||||| ||||   ||||||||||| |||||    
T  51744619 cccttgtcattattttgaaacttgttcacttttaagtaatg 51744659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 48400584 - 48400627
Alignment:
Q  276 catttcacacagattaagaaaaatgtaaagatgaaagaaagaga 319  Q
    ||||||||||||||||||||||||||| | |||||||| |||||    
T  48400584 catttcacacagattaagaaaaatgtataaatgaaagagagaga 48400627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 39052854 - 39052891
Alignment:
Q  276 catttcacacagattaagaaaaatgtaaagatgaaaga 313  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  39052854 catttcacacagattaagaaaaatgtataaatgaaaga 39052891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 29550679 - 29550723
Alignment:
Q  275 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 319  Q
    |||||||||||||||||||||||||||| | | |||||| |||||    
T  29550679 ccatttcacacagattaagaaaaatgtataaaggaaagagagaga 29550723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 241 - 410
Target Start/End: Original strand, 40562436 - 40562606
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| ||||  |||  || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  40562436 tactccctccgtccctcaatacttgacctacttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattg 40562535  T
Q  340 tccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 410  Q
     |||| |||||||||| |||| || |||||||| ||||||||||||||||||||| |||||||||||||||    
T  40562536 cccttgttattattttgaaacttttacttttaagtaatgattactttctttgttctactacaaacttttac 40562606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 244 - 407
Target Start/End: Original strand, 39150900 - 39151066
Alignment:
Q  244 tccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcc 342  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||| ||    
T  39150900 tccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaaatgtaaagataaaagaaagagaatgatacttttactgagttgccc 39150999  T
Q  343 ttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    || | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  39151000 ttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 39151066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 50777297 - 50777128
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  50777297 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttactgagttg 50777198  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  50777197 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 50777128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 46862856 - 46862687
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||| |||| |||    
T  46862856 tactccctccgtcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatacttttcctgagttg 46862757  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  46862756 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 46862687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 245 - 407
Target Start/End: Complemental strand, 46371217 - 46371057
Alignment:
Q  245 ccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtcct 343  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||    
T  46371217 ccctccgtcccttaataagtgatctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgaattgccct 46371118  T
Q  344 tattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    | | |||||||| |||| ||   ||  || ||||||||||||||||||||||||||||||||||    
T  46371117 tgtcattattttgaaacttt---ttcaaagtaatgattactttctttgttccactacaaacttt 46371057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 241 - 410
Target Start/End: Original strand, 9129401 - 9129574
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgata---tttttactgaa 336  Q
    ||||||||| |||||| |||| ||||| || ||||| |||||||| ||||||| |||| ||||||||| ||||||||||| |||||   |||||||| ||    
T  9129401 tactccctcggtccctcaatacgtgatatacttgactatttcacaaagattaacaaaagtgtaaagataaaagaaagagaatgataatatttttactcaa 9129500  T
Q  337 ttgtccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 410  Q
    |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  9129501 ttgtccttgttattatttttaaactttcacttttaagtaatgattactttctttgttccactacaaaattttac 9129574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 28036700 - 28036870
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgata-tttttactgaatt 338  Q
    |||||||| ||||||| ||||||||| ||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||| ||    
T  28036700 tactcccttcgtcccttaataagtgacttatttgaccatttcacacaaattaagaaaagtgtaaagataaaagaaagagagtgatattttttactgagtt 28036799  T
Q  339 gtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    | |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  28036800 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 28036870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 32046133 - 32045964
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||| || |||    
T  32046133 tactccctccatcactgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaaaatgaaagaaagaaagtgatacttttaccgagttg 32046034  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| |  ||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  32046033 cccttgtcgttattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 32045964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 38321942 - 38321776
Alignment:
Q  240 gtactccctccgtccctgaataagtgatttattgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||| | ||||| |||||||||  |||   ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  38321942 gtactcccttcatcccttaataagtgacctat---ccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 38321846  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  38321845 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 38321776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 243 - 407
Target Start/End: Complemental strand, 8229362 - 8229194
Alignment:
Q  243 ctccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatg-aaagaaagagagtgatatttttactgaattgt 340  Q
    ||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||| |||     
T  8229362 ctccctcggtctctgaataagtgatttatttgaccatttcacacagattaagaaaagtgtaaagatgaaaaaaaaaagagtgatatttttactgagttgc 8229263  T
Q  341 ccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| | |||||||| ||||   ||||||||||| ||||||||||||||||| || |||||||||||||    
T  8229262 ccttgtcattattttaaaactttttcacttttaagtaatgattactttctttatttcactacaaacttt 8229194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 1207452 - 1207621
Alignment:
Q  241 tactccctccgtccctgaataagtgattta-ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| ||||  |||  || ||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||    
T  1207452 tactccctccgtcccttaatacttgacctacttgaccatttcacacagattaagaaaagtgtagagatgaaagaaagataatgatatttttactgaattg 1207551  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| |||||||||||||| ||||||| |||||||||||    
T  1207552 cccttgtcattattttgaaactttttcacttttaagtaatgattactttccttgttcctctacaaacttt 1207621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 1929217 - 1929385
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||    
T  1929217 tactccctccgtccctgaataagtgacatatttgatcatttcacacagattaagaaaagtgtaaagatgaaagaaaaagagtgatacttttactgagttg 1929316  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||  ||| ||||||||||||||||||||    
T  1929317 cccttgtcattattttgaaactttttcacttttaagtaatgatt-ttttttttgttccactacaaacttt 1929385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 323 - 410
Target Start/End: Complemental strand, 38817988 - 38817902
Alignment:
Q  323 atatttttactgaattgtccttattattatttttaaaccttcacttttaaataatgattactttctttgttccactacaaacttttac 410  Q
    ||||||||| |||||||||||| |||||||||| ||||||||| |||||| |||| ||||||||||||||| ||||||||||||||||    
T  38817988 atatttttattgaattgtccttgttattattttgaaaccttca-ttttaagtaattattactttctttgtttcactacaaacttttac 38817902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 43896000 - 43895957
Alignment:
Q  276 catttcacacagattaagaaaaatgtaaagatgaaagaaagaga 319  Q
    ||||||||||| ||||||||||||||| |||||||||| |||||    
T  43896000 catttcacacatattaagaaaaatgtatagatgaaagagagaga 43895957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 9590673 - 9590625
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 319  Q
    |||||||||||||| |||||||||||| |||| | |||||||| |||||    
T  9590673 ttgaccatttcacatagattaagaaaattgtataaatgaaagagagaga 9590625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 31634244 - 31634292
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 319  Q
    |||||||||||||| ||||||||||||||||| | || ||||| |||||    
T  31634244 ttgaccatttcacatagattaagaaaaatgtataaataaaagagagaga 31634292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 36326154 - 36326202
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 319  Q
    |||| |||||||||||||||||||||| |||| | |||||||| |||||    
T  36326154 ttgaacatttcacacagattaagaaaagtgtataaatgaaagagagaga 36326202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 70053 - 69884
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||| ||||||||| ||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  70053 tactccctccgtccctaaataagtgacttatttgaccatttgatacagattaagaaaagtgtaaagatgaaagaaagagagtgataattttactgagttg 69954  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    ||||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  69953 tccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 69884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 10017 - 10186
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||| ||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||    
T  10017 tactccctccatcccttaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagataaaagaaagagagtgatatttttactgagttg 10116  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| |||||||||| ||||   ||||||||||| |||||||||||||||||||||||||| |||||||    
T  10117 cccttgttattattttgaaactttttcacttttaagtaatgattactttctttgttccactataaacttt 10186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 250 - 407
Target Start/End: Complemental strand, 29182882 - 29182722
Alignment:
Q  250 cgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttatta 348  Q
    ||||| |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | |    
T  29182882 cgtccttgaataagtgacatatttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgagttgcccttgtca 29182783  T
Q  349 ttatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    ||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  29182782 ttattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 29182722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 277 - 407
Target Start/End: Complemental strand, 30736682 - 30736550
Alignment:
Q  277 atttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcacttttaaat 374  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||   ||||||||||| |    
T  30736682 atttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgatatttttactgaattgtccttgtcattattttgaaactttttcacttttaagt 30736583  T
Q  375 aatgattactttctttgttccactacaaacttt 407  Q
    ||||||||||||||||||||| |||||||||||    
T  30736582 aatgattactttctttgttcctctacaaacttt 30736550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 12350573 - 12350403
Alignment:
Q  240 gtactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaatt 338  Q
    ||||||||||||||| | |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| ||    
T  12350573 gtactccctccgtccataaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtgatgcttttactgagtt 12350474  T
Q  339 gtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    | |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||  ||||||||||||    
T  12350473 gcccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttttactacaaacttt 12350403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 240 - 407
Target Start/End: Original strand, 28541586 - 28541756
Alignment:
Q  240 gtactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaatt 338  Q
    ||||||||||||||||| |||||||||  |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||  ||    
T  28541586 gtactccctccgtccctaaataagtgacctatttgaccattttacacagattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgggtt 28541685  T
Q  339 gtccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    | |||| | |||||||| ||||   ||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  28541686 gcccttgtcattattttgaaactttttcacttttaagtaatgattattttttttgttccactacaaacttt 28541756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 16436075 - 16435910
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||||||||||    ||||| ||||||||| |||    
T  16436075 tactccctccgtccctgaataagtgacctatttgagcatttcacacagattaagaaaagtgtaaagatgaaagaaag----tgatacttttactgagttg 16435980  T
Q  340 tccttattattatttttaaacctt--cacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| |||| ||  ||||||||| ||||||||||||||||||||||||||||||||||    
T  16435979 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 16435910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 1870800 - 1870662
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 370  Q
    ||||| |||| |||||||||| ||||| | |||||||||||||||| || ||||||||||||| ||||| |||| |||||||||| || |||||||||||    
T  1870800 ttgacaattttacacagatta-gaaaagtataaagatgaaagaaagggaatgatatttttactaaattgcccttgttattattttgaagccttcactttt 1870702  T
Q  371 aaataatgattactttctttgttccactacaaacttttac 410  Q
    || |||||||||||||||||||||||||||||||||||||    
T  1870701 aagtaatgattactttctttgttccactacaaacttttac 1870662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 7271109 - 7271247
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 368  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||| | |||||||| ||||   |||||||    
T  7271109 ttgacaatttcacacagattaagaaaagtgtaaagatgaaagaaatagaatgatatttttactgaattgcccttgtcattattttgaaactttttcactt 7271208  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  7271209 ttaagtaatgattactttctttattccactacaaacttt 7271247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 13210610 - 13210472
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 370  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||  ||||||||||| | |||| ||| |||||| |||| |||||||||    
T  13210610 ttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagaatgattattttactgaatcgcccttgtta-tattttgaaactttcactttt 13210512  T
Q  371 aaataatgattactttctttgttccactacaaacttttac 410  Q
    || |||  ||||||||||||||||||||||||||||||||    
T  13210511 aagtaagaattactttctttgttccactacaaacttttac 13210472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 243 - 407
Target Start/End: Complemental strand, 13042268 - 13042103
Alignment:
Q  243 ctccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtc 341  Q
    |||||||||||| |||||||||||| |||| ||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| |    
T  13042268 ctccctccgtccttgaataagtgatctatttgattatttcacacagattaa-aaaagtgtaaagatgaaagaaagagagtgatatttttactgagttgcc 13042170  T
Q  342 cttattattattt-ttaaaccttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    ||| | |||||||   |||  ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  13042169 cttgtcattatttaaaaaattttcacttttaagtaatgattattttctttgttccactacaaacttt 13042103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 1241409 - 1241240
Alignment:
Q  240 gtactccctccgtccctgaataagtgatttattg-accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaatt 338  Q
    ||||||||||||||||||||||||| || ||||  | ||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||    
T  1241409 gtactccctccgtccctgaataagtaatctatttcatcatttcacacaaattaagaaaaatgtaaaaatgaaagaaagaaagtgatacttttactgagtt 1241310  T
Q  339 gtccttattattatttttaaaccttcac-ttttaaataatgattactttctttgttccactacaaacttt 407  Q
    | |||| | |||||||| |||| ||  | |||||| ||||||||||||||||||||||||| ||||||||    
T  1241309 gcccttgtcattattttgaaactttttcattttaagtaatgattactttctttgttccactgcaaacttt 1241240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 271 - 407
Target Start/End: Original strand, 31013526 - 31013664
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaac--cttcactt 368  Q
    |||||||||||| |||||||||||||| |||||| | |||||||||| | ||||||||||||||||||| |||||| |||||||| ||||   |||||||    
T  31013526 ttgaccatttcatacagattaagaaaagtgtaaaaacgaaagaaagataatgatatttttactgaattgcccttatcattattttgaaactttttcactt 31013625  T
Q  369 ttaaataatgattactttctttgttccactacaaacttt 407  Q
    |||| ||||||||| ||||||||||| ||||||||||||    
T  31013626 ttaagtaatgattattttctttgttctactacaaacttt 31013664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 271 - 403
Target Start/End: Original strand, 31833622 - 31833751
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 370  Q
    |||||||||| ||||| |||||||||| ||||||||||||||||| | | ||||||||||||| ||||| ||   |||||||||| ||||||||| ||||    
T  31833622 ttgaccattttacacaaattaagaaaagtgtaaagatgaaagaaaaataatgatatttttactaaattgccc---ttattattttgaaaccttcattttt 31833718  T
Q  371 aaataatgattactttctttgttccactacaaa 403  Q
    || ||||||||| ||||||||||||||||||||    
T  31833719 aagtaatgattattttctttgttccactacaaa 31833751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 381
Target Start/End: Original strand, 17510202 - 17510309
Alignment:
Q  274 accatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcacttttaaa 373  Q
    ||||||||| |||| |||| |||| ||||||  | || |||||||| |||||||| |||| | |||||| |  ||||| || ||||  ||||||||||||    
T  17510202 accatttcatacagtttaaaaaaagtgtaaaagtaaatgaaagagaatgatatttatactaatttgtccctgctattaattgtaaaatttcacttttaaa 17510301  T
Q  374 taatgatt 381  Q
    ||||||||    
T  17510302 taatgatt 17510309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 92169 - 92338
Alignment:
Q  241 tactccctccgtccctgaataagtgatttat-tgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||| |||||||||||||  ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||| |||    
T  92169 tactccctccgttcctgaataagtgacctatgtgaccatttcacatagattaagaaaagtgtaaagatgaaagaaagagagtgacacttttactgagttg 92268  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||||||||||||||||||||||||||||    
T  92269 cccttgtcattattttgaaactttttcacttttaagtaatgattactttctttgttccactacaaacttt 92338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 10593 - 10762
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    ||||||||||||||||||||||||||  |||| ||||||| |||| | |||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  10593 tactccctccgtccctgaataagtgacctatttgaccattccacataaattaagaaaagtgtaaagatgaaagaaagagagtgatacttttactgagttg 10692  T
Q  340 tccttattattatttttaaac--cttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| ||||   ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  10693 cccttgtcattattttgaaactttttcacttttaagtaatgattattttctttgttccactacaaacttt 10762  T

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Target: scaffold0532 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 4114 - 3945
Alignment:
Q  241 tactccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattg 339  Q
    |||||||||||||||||||||| | || |||| |||||||||||||||||||||||||  |||||||||||| ||| |||| | || ||||||||| ||     
T  4114 tactccctccgtccctgaataaataatctatttgaccatttcacacagattaagaaaagggtaaagatgaaaaaaaaagagcgctacttttactgagtta 4015  T
Q  340 tccttattattatttttaaacctt--cacttttaaataatgattactttctttgttccactacaaacttt 407  Q
     |||| | |||||||| |||| ||  ||||||||| ||||||||||||||||||||||| ||||||||||    
T  4014 cccttgtcattattttaaaactttttcacttttaagtaatgattactttctttgttccattacaaacttt 3945  T

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Target: scaffold1194 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 381
Target Start/End: Complemental strand, 1236 - 1127
Alignment:
Q  271 ttgaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtgatatttttactgaattgtccttattattatttttaaaccttcactttt 370  Q
    |||||||||||||||| ||||| | || ||||||||||||||||||||| |||||||||||||||||||  ||| |||||||||| ||||||||||||||    
T  1236 ttgaccatttcacacaaattaa-acaagtgtaaagatgaaagaaagagaatgatatttttactgaattgctcttgttattattttgaaaccttcactttt 1138  T
Q  371 aaataatgatt 381  Q
    || ||||||||    
T  1137 aagtaatgatt 1127  T

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Target: scaffold0318 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 16641 - 16562
Alignment:
Q  244 tccctccgtccctgaataagtgatttatt-gaccatttcacacagattaagaaaaatgtaaagatgaaagaaagagagtg 322  Q
    ||||||||||||| |||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16641 tccctccgtccctaaataagtgacctatttgaccatttcacacagattaagaaaagtgtaaagatgaaagaaagagagtg 16562  T

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Target: scaffold0318; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 16533 - 16488
Alignment:
Q  362 ttcacttttaaataatgattactttctttgttccactacaaacttt 407  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||    
T  16533 ttcacttttaagtaatgattactttctttgtttcactacaaacttt 16488  T

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Target: scaffold0685 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 6352 - 6397
Alignment:
Q  275 ccatttcacacagattaagaaaaatgtaaagatgaaagaaagagag 320  Q
    |||||||||||||||||||||||||||| | | |||||| ||||||    
T  6352 ccatttcacacagattaagaaaaatgtataaaggaaagagagagag 6397  T

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Target: scaffold0250 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 20611 - 20566
Alignment:
Q  274 accatttcacacagattaagaaaaatgtaaagatgaaagaaagaga 319  Q
    ||||||||||||||||||||||||||||| | ||| |||| |||||    
T  20611 accatttcacacagattaagaaaaatgtataaatggaagagagaga 20566  T

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