View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_40 (Length: 240)
Name: NF10098_low_40
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_40 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5280644 - 5280866
Alignment:
| Q |
1 |
ttacctggtgatacatatccctgaggatgtagaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatccatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280644 |
ttacctggtgatacatatccctgaggatgtagaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatccatt |
5280743 |
T |
|
| Q |
101 |
gcatcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcttacagt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280744 |
gcatcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcttacagt |
5280843 |
T |
|
| Q |
201 |
aaccactccaagtgatgtctcag |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5280844 |
aaccactccaagtgatgtctcag |
5280866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5288657 - 5288879
Alignment:
| Q |
1 |
ttacctggtgatacatatccctgaggatgtagaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatccatt |
100 |
Q |
| |
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|||||||| |||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5288657 |
ttacctggggatacatatccctgaggaagtagaataagcaaaagagctgcagtgatgacagtcaagttttgaagtgcttcaatccttaaaaccacccatt |
5288756 |
T |
|
| Q |
101 |
gcatcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcttacagt |
200 |
Q |
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||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
5288757 |
ccatggccccatttgaatgaaagaacaatgaagcatctgtgtccacaagtttcaagtagtttttgaaaaatctgtctaccatgttgaatgatcttactgt |
5288856 |
T |
|
| Q |
201 |
aaccactccaagtgatgtctcag |
223 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
5288857 |
aactactccaagtgatgtctcag |
5288879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14947880 - 14948102
Alignment:
| Q |
1 |
ttacctggtgatacatatccctgaggatgtagaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatccatt |
100 |
Q |
| |
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|||||||| |||||||||||| ||||| ||||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||| ||| | ||||| |
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| T |
14947880 |
ttacctggcgatacatatccccgaggaagtagaataatcagcaaagctgcagtgatgacagtcaagttttgaagtgcttcaacccttacaactacccatt |
14947979 |
T |
|
| Q |
101 |
gcatcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcttacagt |
200 |
Q |
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|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14947980 |
ccattgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgccaaatgctcttacagt |
14948079 |
T |
|
| Q |
201 |
aaccactccaagtgatgtctcag |
223 |
Q |
| |
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||| |||||||| |||||||||| |
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| T |
14948080 |
aactactccaagcgatgtctcag |
14948102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15127471 - 15127251
Alignment:
| Q |
1 |
ttacctggtgatacatatccctgaggatgtagaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatccatt |
100 |
Q |
| |
|
|||||||| |||| ||||| |||||| ||||||| || | ||||||||| |||||||||||||| ||| |||||||||||||||||||||| | ||||| |
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| T |
15127471 |
ttacctggggatagatatctttgaggaagtagaatgagtagcaaagctgcagtgatgacagtcaaatttagaagtgcttcaatccttaaaactaaccatt |
15127372 |
T |
|
| Q |
101 |
gcatcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcttacagt |
200 |
Q |
| |
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||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
15127371 |
ccattgccacattggaatgaaagaacaatgaagcatctgtatccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcgtacggt |
15127272 |
T |
|
| Q |
201 |
aaccactccaagtgatgtctc |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
15127271 |
aaccactccaagtgatgtctc |
15127251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 5308704 - 5308483
Alignment:
| Q |
2 |
tacctggtgatacatatccctgaggatgtagaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatccattg |
101 |
Q |
| |
|
||||||| || |||||||| |||| |||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||| ||||| |
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| T |
5308704 |
tacctggggacacatatccacaaggaagtagaataagcaacaaagctgcagtgatgacagttatattttgaattgcttcaatccttaaaaccacccattc |
5308605 |
T |
|
| Q |
102 |
catcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcttacagta |
201 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
5308604 |
catggccacattagaatgaaagaacaatgaagcatctgagtccacaagttttaagtaatttttgtaaaatctatctaccatgttgaatgctcttatagta |
5308505 |
T |
|
| Q |
202 |
accactccaagtgatgtctcag |
223 |
Q |
| |
|
||||||||| |||||||||||| |
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| T |
5308504 |
accactccatgtgatgtctcag |
5308483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 5315652 - 5315462
Alignment:
| Q |
31 |
agaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatccattgcatcgccacattagaatgaaagaacaatg |
130 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||| || |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
5315652 |
agaattagcaacaaagctgcggtgatgatagttaaattttgaagtgcttcaatccttataaccatccattccattcccacattagaatgaaagaacaatg |
5315553 |
T |
|
| Q |
131 |
aagcatctgtgtccacaagttttaagtagtttttgaaaaatctgtctaccatgttgaatgctcttacagtaaccactccaagtgatgtctc |
221 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5315552 |
aagcatctttgtccacaagttttaagtagtttttgtaaaatccatctaccatgttgaatgctcttacagtaaccactccaagtgatgtctc |
5315462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 31524751 - 31524973
Alignment:
| Q |
2 |
tacctggtgatacatatccctgaggatgtagaataagcaacaaagctgctgtgatgacagtcaagttttgaagtgcttcaatccttaaaaccatccattg |
101 |
Q |
| |
|
||||||| || |||||||| |||||| |||||||||||||||| ||||| ||||| || ||||| |||||||||| |||||||||| ||||||||| | |
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| T |
31524751 |
tacctggagacacatatccatgaggaagtagaataagcaacaatgctgcagtgataactgtcaaagtttgaagtgcctcaatccttataaccatccactc |
31524850 |
T |
|
| Q |
102 |
catcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagtttt-aagtagtttttgaaaaatctgtctaccatgttgaatgctcttacagt |
200 |
Q |
| |
|
||| || ||||||||||||||||||| | |||||||||||| ||||||||| ||||||| ||| | || |||||||||||||||||||||||||| ||| |
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|
| T |
31524851 |
catggcaacattagaatgaaagaacagcgtagcatctgtgtcgacaagttttaaagtagtatttcataagtctgtctaccatgttgaatgctcttatagt |
31524950 |
T |
|
| Q |
201 |
aaccactccaagtgatgtctcag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
31524951 |
aaccactccaagtgatgtctcag |
31524973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 114019 - 113952
Alignment:
| Q |
96 |
ccattgcatcgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttt |
163 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
114019 |
ccattccattgccacattagaatgaaagaacaatgaagcatctgtgtccacaagttttaagtagtttt |
113952 |
T |
|
Back To:
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