View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10098_low_45 (Length: 226)
Name: NF10098_low_45
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 19379021 - 19378833
Alignment:
| Q |
18 |
aatatagcatatcgttgttcacaatattattcactaggtcgcaagatcaggttgtttacgacaacagtgttacctatatgtttatacaacgtacatagca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19379021 |
aatatagcatatcgttgttcacaatattattcactaggtcgcaagatcaggttgtttacgacaacagtgttacctatatgtttatacaacgtacatagca |
19378922 |
T |
|
| Q |
118 |
agcaatgtttgccttgtgatcactgtgcgacaaaatagtaattccgctagcctccccttcttcctgtatcgactaattgatgtaagtgt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19378921 |
agcaatgtttgccttgtgatcactgtgcgacaaaatagtaattccgctagcctccccttcttcctgtatcgactaattgatgtaagtgt |
19378833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 212
Target Start/End: Complemental strand, 19404059 - 19403880
Alignment:
| Q |
28 |
atcgttgttcacaatattattcactaggtcgcaagatcaggttgtttacgacaacagtgttacctatatgtttatacaacgtacatagcaagcaatgttt |
127 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
19404059 |
atcgttgttcattatattattcactaggccgcaagatcaggttgtttacgacaacagtgttacctatatgtt-atacaac----atagcaagcaatgttt |
19403965 |
T |
|
| Q |
128 |
gccttgtgatcactgtgcgacaaaatagtaattccgctagcctccccttcttcctgtatcgactaattgatgtaagtgttcttct |
212 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19403964 |
gccttgtgatcactgtgagacaaaatagtaatgccgctagccttctcttcttcctgtatcgactaattgatgtaagtgttcttct |
19403880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 31 - 212
Target Start/End: Complemental strand, 18106453 - 18106274
Alignment:
| Q |
31 |
gttgttcacaatattattcactaggtcgcaagatcaggttgtttacgacaacagtgttacctatatgtttatacaacgtacatagcaagcaatgtttgcc |
130 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18106453 |
gttgttcacaatattattcactatgttgcaagctcgggttgtttacgacaaccgtgttacctatatgtttataca----acatagcaagcaatgtttgcc |
18106358 |
T |
|
| Q |
131 |
ttgtgatcactgtgcgacaaaatagtaattccgctagcctccccttcttcctgtatc--gactaattgatgtaagtgttcttct |
212 |
Q |
| |
|
|||||||||||||| |||| ||||||||| || ||||||| | ||||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
18106357 |
ttgtgatcactgtgagacacaatagtaatgccactagccttctcttcttcgagtatcaagactaattgatgtaagagttgttct |
18106274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 160
Target Start/End: Complemental strand, 17945797 - 17945669
Alignment:
| Q |
28 |
atcgttgttcacaatattattcactaggtcgcaagatcaggttgtttacgacaacagtgttacctatatgtttatacaacgtacatagcaagcaatgttt |
127 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| | | |
|
|
| T |
17945797 |
atcgctgttcacaatattattcactatattgcaagatctggttgtttacgacagcagtgttacctatatgtttataca----acatagcaagcaaaatct |
17945702 |
T |
|
| Q |
128 |
gccttgtgatcactgtgcgacaaaatagtaatt |
160 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| |
|
|
| T |
17945701 |
gccttgcgatcactgtgagacaaaatagtaatt |
17945669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 19416996 - 19416873
Alignment:
| Q |
33 |
tgttcacaatattattcactaggtcgcaagatcaggttgtttacgacaacagtgttacctatatgtttatacaacgtacatagcaagcaatgtttgcctt |
132 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||| |
|
|
| T |
19416996 |
tgttcacaatattattcactatatcgcaagattgggttatttacgacagcagtgttacctatatgtttataca----acatagcaagcaaaatctgcctt |
19416901 |
T |
|
| Q |
133 |
gtgatcactgtgcgacaaaatagtaatt |
160 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
19416900 |
gtgatcactgtgagacaaaatagtaatt |
19416873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University