View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_5 (Length: 462)
Name: NF10098_low_5
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 12 - 366
Target Start/End: Complemental strand, 4398649 - 4398292
Alignment:
| Q |
12 |
cacagatagttatgatacttgattgagagaccaacagtggatttataagcctaaaataaatcaatatatttcatccactagatgttaatgcgtcaagaaa |
111 |
Q |
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| T |
4398649 |
cacagatagttatgatacttgattgagagatcaacagtggatttataagcctaaaataaatcaatatatttcatccactagatgttaatgcgtcaagaaa |
4398550 |
T |
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| Q |
112 |
atcgtacccttcgccaaaaaagaaattaaagaaaattgtactctaaagttgccactaaaaatggttgaaattcacc--atggggtttaattgtccatagt |
209 |
Q |
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| T |
4398549 |
atcgtacccttcgccaaaaaagaaattaaagaaaattgtacactaaagttgccactaaaaatggttgaaattcaccatatggggtttaattgtccatagt |
4398450 |
T |
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| Q |
210 |
gcatttattcaaaannnnnnngtccatagtgcatgaatgtaatcattcacgaaaagaggtacaagatgcaaatgcaatagttgcatgtacatttgatgtc |
309 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4398449 |
gcatttattcaaaaaaaatttgtccatagtgcatgaatgtaatcattcacgaaaagaggtacaagatgcaaattcaatagttgcatgtacatttgatgtc |
4398350 |
T |
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| Q |
310 |
taaacaataaaccacttatgacccatt-taataagatttattttgagcttatgcgaaa |
366 |
Q |
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|||||||||| ||||||| |||||||| |||||||||||||||||| |||||||||| |
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| T |
4398349 |
taaacaataatccacttaggacccattcgaataagatttattttgagtttatgcgaaa |
4398292 |
T |
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