View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_51 (Length: 204)
Name: NF10098_low_51
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_51 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 41972221 - 41972414
Alignment:
| Q |
11 |
caaaggcataacttgaggactaattaatcatccatccaggaagcattatgatatgcttccatttttcttcatgnnnnnnnnaatctaaatggaataaaaa |
110 |
Q |
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| T |
41972221 |
caaaagcataacttgaggactaattaatcatccaaccaggaagcattatgatatgcttccatttttcttcatgttttttttaatctaaatggaataaaaa |
41972320 |
T |
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| Q |
111 |
cacactcatggttgatgtgcattaatctaagagtttattcattaagaattaaccacatgnnnnnnnacctggttagcacatcctattccaaaac |
204 |
Q |
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| T |
41972321 |
cacactcatggttgatgtacattaatctaagagtttattcattaagaattaaccacatgtttttttacctggttagcacatcctattccaaaac |
41972414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 1240589 - 1240781
Alignment:
| Q |
11 |
caaaggcataacttgaggactaattaatcatccatccaggaagcattatgatatgcttccatttttcttcatgnnnnnnnnaatctaaatggaataaaaa |
110 |
Q |
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| T |
1240589 |
caaaagcataacttgaggactaattaatcatccaaccaggaagcattatgatatgcttccatttttcttcatgttttttt-aatctaaatggaataaaaa |
1240687 |
T |
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| Q |
111 |
cacactcatggttgatgtgcattaatctaagagtttattcattaagaattaaccacatgnnnnnnnacctggttagcacatcctattccaaaac |
204 |
Q |
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| T |
1240688 |
cacactcatggttgatgtacattaatctaagagtttattcattaagaattgaccacatgtttttttacctggttagcacatcctattccaaaac |
1240781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 42518929 - 42519002
Alignment:
| Q |
132 |
ttaatctaagagtttattcattaagaattaaccacat-gnnnnnnnacctggttagcacatcctattccaaaac |
204 |
Q |
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| T |
42518929 |
ttaatctaagtgtttattcattaaaaattaaccacataatatttttacctggttagcacatcctattccaaaac |
42519002 |
T |
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