View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_6 (Length: 461)
Name: NF10098_low_6
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Original strand, 26893062 - 26893493
Alignment:
| Q |
19 |
ctttgtccaggaataatccgtgaaaccgaagataattttagagtcctttcctttttatgagaaatccaaattagtgttgtttcatcctgttaatgccact |
118 |
Q |
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| T |
26893062 |
ctttgtccaggaataatccgtgaaaccgaagataattttagggtcctttcctttttatgagaaatccaaattagtgttgtttcatcctgttaatgccact |
26893161 |
T |
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| Q |
119 |
aaatatgaaattagttagagatagtaaactcaccatactaacatttaatggaggcactcaaatttttgtcctagatttataaaccgcgtagaatctcgga |
218 |
Q |
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| T |
26893162 |
aaatatgaaattagttagagatagtaaactcaccatactaacatttaatggaggcactcaaatttttgtcctagatttataaaccgcgtagaatctcgga |
26893261 |
T |
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| Q |
219 |
taattcgagtcacgctagaactgtggagataaattcaattcataactcataataagtaaaaccttaccaaggagagtctgaaagggcgaacttttggctt |
318 |
Q |
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| T |
26893262 |
taattcgagtcacgctagaactgtggagataaattcaattcataactcataataagtaaaaccttaccaaggagagtctgaaagggcgaacttttggctt |
26893361 |
T |
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| Q |
319 |
ggcttttcgacagtactttattaactgagatcctttctttaaaacaacgagtgccttcaaaaagagttgaaacacacatcaaattcttgtttgtaaatta |
418 |
Q |
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| T |
26893362 |
ggcttttcgacagtactttattaactgagatcctttctttaaaacaacgagtgccttcaaaaagagttgaaacacacatcaaattcttgtttgtaaatta |
26893461 |
T |
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| Q |
419 |
aagcacctaactaagaaaatataatccttcat |
450 |
Q |
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| T |
26893462 |
aagcacctaactaagaaaatataatccttcat |
26893493 |
T |
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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 16013254 - 16013167
Alignment:
| Q |
41 |
aaaccgaagataattttagagtcctttcctttttatgagaaatccaaattagtgttgtttcatcctgttaatgccactaaatatgaaa |
128 |
Q |
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|||||||||| || || ||| || |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
16013254 |
aaaccgaagacaacttcagattcttttcctttccatgagaaatccaaattagtgatgtttcatcctgctaatgccactaaatatgaaa |
16013167 |
T |
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