View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_7 (Length: 442)
Name: NF10098_low_7
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 250 - 432
Target Start/End: Original strand, 46031978 - 46032160
Alignment:
| Q |
250 |
gagatcacatatatacattttttaaaactaattactaacatttgtcggaggtttaggacttacgctttcctcgaacatccaggaccttaaaaggttcgct |
349 |
Q |
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| T |
46031978 |
gagatcacatatatacattttttaaaactaattactaacatttgtcggaggtttaggacttactctttcctcgaacatccaggaccttaaaaggttcgct |
46032077 |
T |
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| Q |
350 |
tctaccttcccgaatgcacactccaattgaatttgattgaactattttaacccctagccgaaattgaccgtttcttccctttg |
432 |
Q |
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| T |
46032078 |
tctaccttctcgaatgcacactccaattgaattagattgaactattttaacccctagccgaaattgaccgtttcttccctttg |
46032160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 46031740 - 46031896
Alignment:
| Q |
19 |
aatgaagcttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctgatgccaacagcttgtcaagtggaccatttttacgtatcc |
118 |
Q |
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| T |
46031740 |
aatgaagcttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctgatgccaacagcttgtcaagtggaccatttttacgtatcc |
46031839 |
T |
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| Q |
119 |
ctttcagacgccatacctcatcattcaacgatggacgatcgtgtttctcgtaatctg |
175 |
Q |
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| T |
46031840 |
ctttcagacgccatacctcatcattcaacgatggacgatcgtgtttctcgtaatctg |
46031896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 260 - 432
Target Start/End: Original strand, 46019314 - 46019488
Alignment:
| Q |
260 |
atatacattttttaaa-actaattactaacatttgtcggaggtttaggac-ttacgctttcctcgaacatccaggaccttaaaaggttcgcttctacctt |
357 |
Q |
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| T |
46019314 |
atatacattttttaacgattaattactaaagtttgtcggagatttaggaccttaccctttcctcgaacatccaggaccttaaaaggttcgcttctacctt |
46019413 |
T |
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| Q |
358 |
cccgaatgcacactccaattgaatttgattgaactattttaacccctagccgaaattgaccgtttcttccctttg |
432 |
Q |
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| T |
46019414 |
cccgaatgcacgctccaattgaattagattgaactattttaacccctagccgaaattgaccggttcttctctttg |
46019488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 46019133 - 46019256
Alignment:
| Q |
48 |
caaaaaatccttaacagtgtgtattccatctgatgccaacagcttgtcaagtggaccatttttacgtatccctttcagacgccatacctcatcattcaac |
147 |
Q |
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| T |
46019133 |
caaaaaatccttaatagtgtgtattccatccaaggccaactgcttgtcaagtgttccatctctacgtattcctctcagacgccataccttatcattcaat |
46019232 |
T |
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| Q |
148 |
gatggacgatcgtgtttctcgtaa |
171 |
Q |
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| T |
46019233 |
gatggacgatcgcgcttctcgtaa |
46019256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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