View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_8 (Length: 436)
Name: NF10098_low_8
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 51115121 - 51114710
Alignment:
| Q |
18 |
atttgtgatgtttcatatgtgtagcaagaaggatccaggttatatcagaatgaatgggcattatgacattaagaaaatgcaagattatgagccctttttg |
117 |
Q |
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| T |
51115121 |
atttgtgatgtttcatatgtgtagcaagaaggatccaggttatatcagaatgaatgggcattatgacattaagaaaatgcaagattatgagccctttttg |
51115022 |
T |
|
| Q |
118 |
ctagctggaaattggtcccaactttgttcaacatgcaagattgtcaggcctcttcgtgcgaaacattgttctacatgtgatcgttgtgttgaacaatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115021 |
ctagctggaaattggtcccaactttgttcaacatgcaagattgttaggcctcttcgtgcgaaacattgttctacatgtgatcgttgtgttgaacaatttg |
51114922 |
T |
|
| Q |
218 |
accatcattgtcctattgtatccaattgcattggaaaaaagaacaaacgagatttctttgctcttcttgtttttgaaacttcagcaatgttggttattgg |
317 |
Q |
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| T |
51114921 |
accatcattgtcctattgtatccaattgcattggaaaaaagaacaaacgagatttctttgctcttcttgttttagaaacttcagcaatgttggttattgg |
51114822 |
T |
|
| Q |
318 |
tgtagtttgtctgaagagactaattcatttaccccttccttcttcatttgggattaaatttgttggttcaatatcctttctaattgctgattatatcttc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114821 |
tgtagtttgtctgaagagactaattcatttaccccttccttcttcatttgggattaaatttgttggttcaatatcctttctaattgctgattatatcttc |
51114722 |
T |
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| Q |
418 |
ttctggcctatg |
429 |
Q |
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|||||||||||| |
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| T |
51114721 |
ttctggcctatg |
51114710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 114 - 426
Target Start/End: Complemental strand, 51105473 - 51105155
Alignment:
| Q |
114 |
tttgctagctggaaattggtcccaactttgttcaacatgcaagattgtcaggcctcttcgtgcgaaacattgttctacatgtgatcgttgtgttgaacaa |
213 |
Q |
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||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||||||||| ||| |||||||| ||||| |||||| |
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| T |
51105473 |
tttgctagctggaaattggtcccaaatttgtgcaacacgcaagattatcaggcctcttcgtacgaaacattgtgctatatgtgatcaatgtgtggaacaa |
51105374 |
T |
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| Q |
214 |
tttgaccatcattgtcctattgtatccaattgcattggaaaaaagaacaaacgagatttctttgctcttcttgtttttgaaacttcagcaatgttggtta |
313 |
Q |
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| T |
51105373 |
tttgaccatcattgtccttggttgtctagttgcattggcaagaaaaacaaacgagatttctttgcttttcttgttttagaaacttcagcaatgttggtta |
51105274 |
T |
|
| Q |
314 |
ttggtgtagtttgtctgaagagactaattcatttaccccttccttcttcatttg------ggattaaatttgttggttcaatatcctttctaattgctga |
407 |
Q |
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| T |
51105273 |
ctggtgtagtttgtctcaagagacttgctcattctcgccgtccttcttcatttggatcatggattaaaattgttggttcaatattctttctaattgctga |
51105174 |
T |
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| Q |
408 |
ttatatcttcttctggcct |
426 |
Q |
| |
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| || || ||||||||||| |
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| T |
51105173 |
taatttcctcttctggcct |
51105155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 51105588 - 51105533
Alignment:
| Q |
23 |
tgatgtttcatatgtgtagcaagaaggatccaggttatatcagaatgaatgggcat |
78 |
Q |
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| T |
51105588 |
tgatgtcttataggtgtagcaccaaggatccaggtaatatcagaatgaatgggcat |
51105533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 48038517 - 48038613
Alignment:
| Q |
155 |
agattgtcaggcctcttcgtgcgaaacattgttctacatgtgatcgttgtgttgaacaatttgaccatcattgtcctattgtatccaattgcattgg |
251 |
Q |
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| T |
48038517 |
agattgtcagacctcttcgtgcaaaacattgttctacatgtgatcgttgtgtggagcaatttgaccatcattgtccttgggtatccaattgcattgg |
48038613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 48038337 - 48038384
Alignment:
| Q |
114 |
tttgctagctggaaattggtcccaactttgttcaacatgcaagattgt |
161 |
Q |
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| T |
48038337 |
tttgctagctggaaattggtcccaactttgtgcaacatgcaaggttgt |
48038384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 48039336 - 48039397
Alignment:
| Q |
268 |
gatttctttgctcttcttgtttttgaaacttcagcaatgttggttattggtgtagtttgtct |
329 |
Q |
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| T |
48039336 |
gatttctttgcttttcttattcttgaagtttcagcaatgttggttactggtggagtatgtct |
48039397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 48038064 - 48038096
Alignment:
| Q |
46 |
aaggatccaggttatatcagaatgaatgggcat |
78 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
48038064 |
aaggatccaggttatatcagaacgaatgggcat |
48038096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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