View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10098_low_9 (Length: 432)
Name: NF10098_low_9
Description: NF10098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10098_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 28226342 - 28225939
Alignment:
| Q |
18 |
catctgctcttttcgatttcttatgattctttagaatatgatgcatatgaaaatgaatggaaaaagggcatgtgaaattcacctcaagatagatatcaat |
117 |
Q |
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| T |
28226342 |
catctgctcttttcgatttcttatgattctttagaatatgatgcatatgaaaatgaatggaaaaagggcatgtgaaattcacctcaagatagatatcaat |
28226243 |
T |
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| Q |
118 |
ggctttgtagaccccatcaaagcaatcccttgcagaatcaggcaaacattctgcaactccaagaaatttagagatctttaggttctgatcaggtgatatc |
217 |
Q |
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| T |
28226242 |
ggctttgtagaccccatcaaagcaatcccttgcagaatcaggcaaacattctgcaactccaagaaatttagagatctttaggttctgatcaggtgatatc |
28226143 |
T |
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| Q |
218 |
tctctcaaatacttgtcaattaatctaccaacccttttcattttctgcaaagacattccatcagagccattggtatcaacaaattgtctaaccaatctta |
317 |
Q |
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| T |
28226142 |
tctctcaaatacttgtcaattaatctaccaacccttttcattttctgcaaagacattccatcagagccattggtatcaacaaattgtctaaccaatctta |
28226043 |
T |
|
| Q |
318 |
tcaccaagttaacatcataataaatccccatatcatgtccagagaccaaaagatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccag |
417 |
Q |
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| T |
28226042 |
tcaccaagttaacatcataataaatccccatatcatgtccagagaccaaaagatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccag |
28225943 |
T |
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| Q |
418 |
ttca |
421 |
Q |
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| T |
28225942 |
ttca |
28225939 |
T |
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Back To:
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Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 94 - 263
Target Start/End: Original strand, 13040378 - 13040547
Alignment:
| Q |
94 |
attcacctcaagatagatatcaatggctttgtagaccccatcaaagcaatcccttgcagaatcaggcaaacattctgcaactccaagaaatttagagatc |
193 |
Q |
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|||||||||||| ||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||| | || |||||||||||| |
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| T |
13040378 |
attcacctcaaggtagatgtcaatggctctatagaccccatcaaagcaatcccttgcaaaatcaggcaaacattctacaacttctaggaatttagagatc |
13040477 |
T |
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| Q |
194 |
tttaggttctgatcaggtgatatctctctcaaatacttgtcaattaatctaccaacccttttcattttct |
263 |
Q |
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| T |
13040478 |
tcaaggttctgatcaggagatatttctatcaaatacttgtcaattaatccactaacttttttcattttct |
13040547 |
T |
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