View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_high_10 (Length: 250)
Name: NF10099_high_10
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 8412961 - 8413096
Alignment:
| Q |
105 |
atatgaaaggttttagttgaatgttaatatgtgtaaggtggtatgaatatttatatatatagcaaagaacaaaagagaaggggtcagaatgaaacaaaga |
204 |
Q |
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| T |
8412961 |
atatgaaaggttttagttgaatgttaatatgtgtaaggtggtatgaatatttatatatatagcaaagaacgaaagagaaggggtcagaatgaaacaaaga |
8413060 |
T |
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| Q |
205 |
aaccctgattgaccagtttaattgaaatagtctctg |
240 |
Q |
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| T |
8413061 |
aaccctgattgaccagtttaattgaaatagtctctg |
8413096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 8435059 - 8435194
Alignment:
| Q |
105 |
atatgaaaggttttagttgaatgttaatatgtgtaaggtggtatgaatatttatatatatagcaaagaacaaaagagaaggggtcagaatgaaacaaaga |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8435059 |
atatgaaaggttttagttgaatgttaatatgtgtaaggtggtatgaatatttatatatatagcaaagaacgaaagagaaggggtcagaatgaaacaaaga |
8435158 |
T |
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| Q |
205 |
aaccctgattgaccagtttaattgaaatagtctctg |
240 |
Q |
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| T |
8435159 |
aaccctgattgaccagtttaattgaaatagtctctg |
8435194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8412911 - 8412962
Alignment:
| Q |
1 |
ttgtaataaagtcatgatatatatgaattaatattatttgaagagtgtttat |
52 |
Q |
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| T |
8412911 |
ttgtaataaagccatgatatatatgaattaatattatttgaagggtgtttat |
8412962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8435009 - 8435060
Alignment:
| Q |
1 |
ttgtaataaagtcatgatatatatgaattaatattatttgaagagtgtttat |
52 |
Q |
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| T |
8435009 |
ttgtaataaagccatgatatatatgaattaatattatttgaagggtgtttat |
8435060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 8394418 - 8394374
Alignment:
| Q |
121 |
ttgaatgttaatatgtgtaaggtggtatgaatatttatatatata |
165 |
Q |
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| T |
8394418 |
ttgaatgttagtatgtgtaaggtggtatcaatacttatatgtata |
8394374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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