View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_high_12 (Length: 240)
Name: NF10099_high_12
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 53657357 - 53657135
Alignment:
| Q |
1 |
ccccctgaaaccatcgattccgatccgaaattgtatgatatctctgacactgtgtttccgtctggcaccactccaacgtcaagtgaagatgacgaaacct |
100 |
Q |
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| T |
53657357 |
ccccctgaaaccatcgattccgatccgaaattgtatgatatctctgacactgtgtttccgtctggcaccactccaacgtcaagtgaagatgacgaaacct |
53657258 |
T |
|
| Q |
101 |
gctaataacgaatcaaatcattattaattacctacttctaatacttaatcaaattattaacttactaaatacttacgctatggctaatcgaatgtgatgg |
200 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53657257 |
gctaataacaaatcaaatcattattaattaactacttctaatacttaatcaaattattaacttactaaatacttacgctatggctaatcgaatgtgatgg |
53657158 |
T |
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| Q |
201 |
atagttaaaggaagatagcttcg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
53657157 |
atagttaaaggaagatagcttcg |
53657135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 29430438 - 29430219
Alignment:
| Q |
8 |
aaaccatcgattccgatccgaaattgtatgatatctctgacactgtgtttccgtctggcaccactccaacgtcaagtgaagatgacgaaacctgctaata |
107 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
29430438 |
aaaccatcgattccgatctgaaattgtgtgatatctctgacatggtgtttccgtctggcaccactcctacgtcaagtgaagatgacgaaacccgctaata |
29430339 |
T |
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| Q |
108 |
acgaatcaaatcattattaattacctacttctaatactta--atcaaattattaactt-acta---aatacttacgctatggctaatcgaatgtgatgga |
201 |
Q |
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|| |||||||||||||||||||| || || | |||||| | ||||| | |||| | || ||||||||||||||||||||| |||||||||||| |
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| T |
29430338 |
acaaatcaaatcattattaattaacttctaatggtacttatgacttaattaattacttgattaaacaatacttacgctatggctaatagaatgtgatgga |
29430239 |
T |
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| Q |
202 |
tagttaaaggaagatagctt |
221 |
Q |
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|||||||||||||||||||| |
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| T |
29430238 |
tagttaaaggaagatagctt |
29430219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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