View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_high_2 (Length: 428)
Name: NF10099_high_2
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Complemental strand, 10842862 - 10842460
Alignment:
| Q |
19 |
cttctgacatccgacttaaatcatggtccaattgggagacttgagctttgagatttttggtagtgtttttgcannnnnnngagacaaactttaaaaaatt |
118 |
Q |
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| T |
10842862 |
cttctaacatccgacttaaatcatggtccaattgggagacttgagctttgagatttttggtagtgtttttgcatttttttgagacaaactttaaaaaatt |
10842763 |
T |
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| Q |
119 |
tatctgcataatcttttgtcacgattctcaagaatatcattttgagaaacaatacttttagatttccaatttagaacttcctcaacttgagttgaaggtt |
218 |
Q |
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| T |
10842762 |
tatctgcataatcttttgtcacgattctcaagaatatcattttgagaaacaatacttttagatttccaatttagaacttcctcaacttgagttgaaggat |
10842663 |
T |
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| Q |
219 |
taagttttccatcagactaaacttcatttggttgtatgaaaggtttggatgatctgttagtgatggggtcgatttttctttctagagcagggaaatgttg |
318 |
Q |
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| T |
10842662 |
taagttttccatcagactaaacttcatttggttgtataaaaggtttggatgatctgttagtgatggggtcgatttttctttctagagcagggaaatgttg |
10842563 |
T |
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| Q |
319 |
gttataatttgaagctgagaacatgattcaagggattggttcagtgnnnnnnncttataaattcctatccatgcaccattattagggtcaaattttctct |
418 |
Q |
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| T |
10842562 |
gttacaatttgaagctgagaacatgattcaagggattggttcagtgtttttttcttataaattcctatccatgcaccattattagggtcaaattttctct |
10842463 |
T |
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| Q |
419 |
gtg |
421 |
Q |
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| T |
10842462 |
gtg |
10842460 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 287
Target Start/End: Complemental strand, 12347971 - 12347817
Alignment:
| Q |
132 |
ttttgtcacgattctcaagaatatcattttgagaaacaatacttttagatttccaatttagaacttcctcaacttgagttgaaggtttaagttttccatc |
231 |
Q |
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|||||||| |||| | |||||||| ||||||| ||| ||| | | ||| | |||||||| ||| || ||| |||| ||| | ||||||||||||| ||| |
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| T |
12347971 |
ttttgtcaagattttggagaatatccttttgagcaaccatattctcagactgccaatttaaaacctcttcagcttgggttaacggtttaagttttc-atc |
12347873 |
T |
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| Q |
232 |
agactaaacttcatttggttgtatgaaaggtttggatgatctgttagtgatggggt |
287 |
Q |
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| T |
12347872 |
tggctggacttcatttggttgtatgattggtttggatgatctgtttgtgattgggt |
12347817 |
T |
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