View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_low_15 (Length: 250)
Name: NF10099_low_15
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 53657594 - 53657357
Alignment:
| Q |
13 |
gagagaggatcagcagggttatagagacggtccacatccgagtcaatttcggttcgtttagcgaaccggcctttaattctaggccgggtttctgcataag |
112 |
Q |
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| T |
53657594 |
gagagaggatcagcagggttatagagacggtccacatccgagtcaatttcggttcgtttagcgaaccggcctttaattctaggccgggtttctgcataag |
53657495 |
T |
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| Q |
113 |
cttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttcacgatccattccacataattg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53657494 |
cttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttcacgatccattccacataattg |
53657395 |
T |
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| Q |
213 |
tgttgctccttgcaccccttggttactactattcacac |
250 |
Q |
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| T |
53657394 |
tgttgctccttgcaccccttggttactactattcacac |
53657357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 29430561 - 29430452
Alignment:
| Q |
131 |
gaatagtcttctcgaattttcggttcttccttttctctctgtacctcataaccctcgcttcacgatccattccacataattgtgttgctccttgcacccc |
230 |
Q |
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| T |
29430561 |
gaatagtcttctcgaattttcagttcttcctcttctctctgtacctcataaccctcgcttcacgatccattccacataattgtgttgctccttgcacccc |
29430462 |
T |
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| Q |
231 |
ttggttacta |
240 |
Q |
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| T |
29430461 |
ttggttacta |
29430452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 48759584 - 48759467
Alignment:
| Q |
82 |
cctttaattctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataa |
181 |
Q |
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|||||||| ||||||| ||||| ||||||||||| || ||||| |||||||| |||||||||||| |||| |||||||| ||||| ||||||||||||| |
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| T |
48759584 |
cctttaatcctaggcctagtttccgcataagctttacgagaagcataacgaattgtcttctcgaatcttcgattcttcctcttctccctgtacctcataa |
48759485 |
T |
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| Q |
182 |
ccctcgcttcacgatcca |
199 |
Q |
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| T |
48759484 |
ccctagcttcacgatcca |
48759467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 3419926 - 3420035
Alignment:
| Q |
82 |
cctttaattctaggccgggtttctgcataagcttttcgtgaagcgtaacgaatagtcttctcgaattttcggttcttccttttctctctgtacctcataa |
181 |
Q |
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|||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||| || ||||||||||||||||||| |
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| T |
3419926 |
cctttaattctaggtctagtttctgcataagcttttctcgaagcgtagcgaatagtcttctcgaatcttctattctttctcttctctctgtacctcataa |
3420025 |
T |
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| Q |
182 |
ccctcgcttc |
191 |
Q |
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|||| ||||| |
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| T |
3420026 |
ccctagcttc |
3420035 |
T |
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