View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_low_17 (Length: 248)
Name: NF10099_low_17
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_low_17 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0771 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 20900241 - 20900484
Alignment:
| Q |
10 |
aagaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttc |
109 |
Q |
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||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
20900241 |
aagaaggtatgactgttagcggcagtactgaagttttaaagccatgtcattacctattacaaaagctttgatacctgtttttatttctaacacgttcttc |
20900340 |
T |
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| Q |
110 |
taatattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtga |
204 |
Q |
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| T |
20900341 |
taatatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtga |
20900440 |
T |
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| Q |
205 |
aacaagcagctctctttgatgaggatttggcagtgtaagtctat |
248 |
Q |
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| T |
20900441 |
aacaagcacctctctttgatgaggatttgacagtgtaagtctat |
20900484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 13950009 - 13950191
Alignment:
| Q |
10 |
aagaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttc |
109 |
Q |
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| T |
13950009 |
aagaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttc |
13950108 |
T |
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| Q |
110 |
taatattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
187 |
Q |
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| T |
13950109 |
taatatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
13950191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 13950199 - 13950238
Alignment:
| Q |
148 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
187 |
Q |
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| T |
13950199 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
13950238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 2149 - 2331
Alignment:
| Q |
10 |
aagaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttcttc |
109 |
Q |
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| T |
2149 |
aagaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttcttc |
2248 |
T |
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| Q |
110 |
taatattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
187 |
Q |
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| T |
2249 |
taatatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
2331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 2339 - 2378
Alignment:
| Q |
148 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
187 |
Q |
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| T |
2339 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
2378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 40702180 - 40702279
Alignment:
| Q |
145 |
tgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtgaaacaagcagctctctttgatgaggatttggcagtgtaagt |
244 |
Q |
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| T |
40702180 |
tgatgataggtaatttatggcatgaattgtgggcaacatctaaaccagtaccagctgttaagcaggcacctcttttcgatgaggatttggcagtgtaagt |
40702279 |
T |
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