View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_low_20 (Length: 240)
Name: NF10099_low_20
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_low_20 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 20900681 - 20900905
Alignment:
| Q |
1 |
ctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20900681 |
ctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgtt |
20900780 |
T |
|
| Q |
101 |
aagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20900781 |
aagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttttagaacatatatgctgattaa |
20900880 |
T |
|
| Q |
201 |
aataagatttgcttcttgtcatatg |
225 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
20900881 |
aataagatttgtttcttgtcatatg |
20900905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 13950235 - 13950458
Alignment:
| Q |
1 |
ctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgtt |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| || | |
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| T |
13950235 |
ctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctgat |
13950334 |
T |
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| Q |
101 |
aagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
13950335 |
cagtgattaattaatacaatgttaaatatagtctactgtta-ccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgattaa |
13950433 |
T |
|
| Q |
201 |
aataagatttgcttcttgtcatatg |
225 |
Q |
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|||| |||||||||||||||||||| |
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| T |
13950434 |
aatatgatttgcttcttgtcatatg |
13950458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2375 - 2598
Alignment:
| Q |
1 |
ctaagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgtt |
100 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| || | |
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|
| T |
2375 |
ctaaattcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctgat |
2474 |
T |
|
| Q |
101 |
aagtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaa |
200 |
Q |
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|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
2475 |
cagtgattaattaatacaatgttaaatatagtctactgtta-ccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgattaa |
2573 |
T |
|
| Q |
201 |
aataagatttgcttcttgtcatatg |
225 |
Q |
| |
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|||| |||||||||||||||||||| |
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|
| T |
2574 |
aatatgatttgcttcttgtcatatg |
2598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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