View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_low_24 (Length: 219)
Name: NF10099_low_24
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 48236090 - 48235888
Alignment:
| Q |
1 |
atccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcggaa |
100 |
Q |
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| T |
48236090 |
atccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcggaa |
48235991 |
T |
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| Q |
101 |
aaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235990 |
aaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatc |
48235891 |
T |
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| Q |
201 |
gtg |
203 |
Q |
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||| |
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| T |
48235890 |
gtg |
48235888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 3686410 - 3686503
Alignment:
| Q |
1 |
atccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatt |
94 |
Q |
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| T |
3686410 |
atcccaatatggtcctcctccttggtgcatgtcaagaatatggatgtttggtatatgaatacatggacaatggtagcttagaagacagattatt |
3686503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 3686530 - 3686602
Alignment:
| Q |
121 |
catggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccaga |
193 |
Q |
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| T |
3686530 |
catggcgaaaacgtttcgaaatagcttatgaaattgcaacagcacttcttttccttcaccaaacaaaaccaga |
3686602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 6516733 - 6516783
Alignment:
| Q |
149 |
tgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaat |
199 |
Q |
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||||||||| |||| |||||||||||||||||| |||||||||| ||||| |
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| T |
6516733 |
tgagattgccactggccttcttttccttcaccaatcaaagccagatccaat |
6516783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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