View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_low_26 (Length: 216)
Name: NF10099_low_26
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 26326903 - 26326704
Alignment:
| Q |
1 |
ccacttgtgagtatgattaggattacaaataaaatgtccataagataaaattaacatataaaatattgttttgataatttgaataataagagaatatttt |
100 |
Q |
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| T |
26326903 |
ccacttgtgagtatgattaggattacaaataaaatgtccataagataaaattaacatataaaatattgttttgataatttgaataataagagaatatttt |
26326804 |
T |
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| Q |
101 |
ataccactcatgttttgcttaagtgtttcagagagcaaatcataagaagcaaattcaaaatagtagattgtctggtagagtggtagttactactatatag |
200 |
Q |
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| T |
26326803 |
ataccactcatgttttgcttaagtgtttcagagagcaaatcataagaagcaaattcaaaatagtagattgtctggtagagtggtagttactactatatag |
26326704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26334843 - 26334802
Alignment:
| Q |
1 |
ccacttgtgagtatgattaggattacaaataaaatgtccata |
42 |
Q |
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| T |
26334843 |
ccacttgtcagtatgatttggattaaaaataaaatgtccata |
26334802 |
T |
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