View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_low_4 (Length: 415)
Name: NF10099_low_4
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_low_4 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 21239178 - 21239027
Alignment:
| Q |
54 |
cttttttgtgtctttctcgtgaaagtgtgagaaaaatcttagcttttaaaacttattatgggtaaagattctgacataaaacttaacatatcctggtcaa |
153 |
Q |
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| T |
21239178 |
cttttttgtttctt-ctcgtgaaagtgtaagaaaaatcttagtttttaaaacttattatgggtaaagattctgacataaaactgaacctatcctggtcaa |
21239080 |
T |
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| Q |
154 |
atagagagccaattgaggatgtttattcattattacttaaacataatttctttac |
208 |
Q |
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| T |
21239079 |
at--agagccaattgaggatgtttattcattgttacttaaacataattactttac |
21239027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 21293449 - 21293538
Alignment:
| Q |
71 |
cgtgaaagtgtgagaaaaatcttagcttttaaaacttattatgggtaaagattctgacataaaa-cttaacatatcctggtcaaatagag |
159 |
Q |
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| T |
21293449 |
cgtgaaagtgtaagaaaaatcttagtttttaaaacttattatgggtaaagattctaacataaaagcttaacctatccaagtctaatagag |
21293538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 21238963 - 21238915
Alignment:
| Q |
273 |
gccgtttttgaaatgctttggaaagacttatctttttgtaagacttttt |
321 |
Q |
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| T |
21238963 |
gccgtttttgaaatgctttggaaagacttatctttttgtaagacttttt |
21238915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 324
Target Start/End: Original strand, 21294361 - 21294412
Alignment:
| Q |
273 |
gccgtttttgaaatgctttggaaagacttatctttttgtaagactttttgat |
324 |
Q |
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| T |
21294361 |
gccgtttttgaactgcgttggaaagacttatctttttgtaagactttttgat |
21294412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 21140309 - 21140342
Alignment:
| Q |
354 |
tcctaatagtgatacaatacttaaaagattctga |
387 |
Q |
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| T |
21140309 |
tcctaatagtgatacaatacttaaaagattctga |
21140342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 53963 - 53912
Alignment:
| Q |
325 |
taggaataatctgtcgttgatgatgttggtcctaatagtgatacaatactta |
376 |
Q |
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| T |
53963 |
taggaataatttgtggctgatgatgttgctcctaatagtgatacaatactta |
53912 |
T |
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