View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_low_7 (Length: 305)
Name: NF10099_low_7
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 40078720 - 40078541
Alignment:
| Q |
15 |
agaaagaagacgggaaaaaa-taggagattgttgtttaataagagataaatagaaagnnnnnnnntacgagagaaaataaagaagtatatttatgtgaat |
113 |
Q |
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| T |
40078720 |
agaaagaagacgggaaaaaaataggagattgttgtttaataagagataaatagaaagaaaaaaaatacgagagaaaataaagaagtatatttatgtgaat |
40078621 |
T |
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| Q |
114 |
tcatacttgcatgttttttaaaatgtgaattcattcactatattttgtgtttggaactttcaaaatttacatgagtgaat |
193 |
Q |
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| T |
40078620 |
tcatacttgcatgttttttaaaatgtgaattcattcactacattttgtgtttggaactttaaaaatttacatgagtgaat |
40078541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 293
Target Start/End: Complemental strand, 40078546 - 40078504
Alignment:
| Q |
251 |
gtgaattgattgagtaaaaaatgagtgaatcgtttaactcctt |
293 |
Q |
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| T |
40078546 |
gtgaattgattcagtcaaaaataagtgaatcgtttaactcctt |
40078504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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