View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10099_low_8 (Length: 271)
Name: NF10099_low_8
Description: NF10099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10099_low_8 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 15176124 - 15176394
Alignment:
| Q |
1 |
caatctggaacacaattcaaaacatgaaatcaagatttatctatggataattggttctaaaaataactaaaacctaggcattagatgaaccttcaaaggg |
100 |
Q |
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| T |
15176124 |
caatctggaacacaattcgaaacatgaaatcaagatttatctatggataattggttctaaaaataactaaaacctagatattagatgaacctttagaggg |
15176223 |
T |
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| Q |
101 |
ttcttcatgacagttgtgaattgaagcatttctgacaaatcaatctcatttccatccacaactttccactcaaaattcaaaacaaaattggcaacaaagt |
200 |
Q |
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| T |
15176224 |
ttcttcatgacagttgtgaattgaagcatttctgacaaatcaatctcatttccatccacaactttccactcaaaattcaaaacaaaattggcaacaaagt |
15176323 |
T |
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| Q |
201 |
attccaagtgcaacaatgctaaaccatagccaggacacatactcctccctgctctaatcggcatcatcttt |
271 |
Q |
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| T |
15176324 |
attccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggcatcatcttt |
15176394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 26495008 - 26494901
Alignment:
| Q |
164 |
ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacatactcctccctgctctaatcggca |
263 |
Q |
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||||||||||| |||||||| ||||| |||||||||||||| || || | || ||| || |||| ||||||| || ||||||||||||| || ||||| |
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| T |
26495008 |
ttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggca |
26494909 |
T |
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| Q |
264 |
tcatcttt |
271 |
Q |
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| T |
26494908 |
tcatcttt |
26494901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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