View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1009_low_1 (Length: 445)
Name: NF1009_low_1
Description: NF1009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1009_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 73 - 416
Target Start/End: Complemental strand, 8139395 - 8139060
Alignment:
| Q |
73 |
gagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaa |
172 |
Q |
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| T |
8139395 |
gagcagagacatcattccaaaaacagtgatattcaagcatgcattcagtaacaaagactaaa---------aaaaaaaatcaacagatgcgcttcaaaaa |
8139305 |
T |
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| Q |
173 |
cacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagattta |
272 |
Q |
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| T |
8139304 |
cacagattcatcattcatagaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttacataaatgattaagattta |
8139205 |
T |
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| Q |
273 |
tacttaatgatcaagaaacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacatcattccaaagtcagcca |
372 |
Q |
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| T |
8139204 |
tacttaatgatcaagaaacataaaaaactgagacatccatcattccaaagcatagattcatcatttatacaaaactgagacataattccaaagtcagcca |
8139105 |
T |
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| Q |
373 |
tgtattaactgatagtgcatacat-aaacaattagatgagagcca |
416 |
Q |
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| T |
8139104 |
tgtattaactgatagtgcatacataaaacaattagatgagagcca |
8139060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 7499529 - 7499701
Alignment:
| Q |
73 |
gagcagagacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaagactcaatnnnnnnnnnnnnnnnntcaacagatgcgcttcaaaaa |
172 |
Q |
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| T |
7499529 |
gagcagaaacatcattccaaaaacagtgatgttcaagcatgcattcagtaacaaagactcaa--------aaaaaaaaatcaacagatgagcttcaaaa- |
7499619 |
T |
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| Q |
173 |
cacagattcatcattcatggaaatgatcatgattgcagaaataaatgatcaagatttttaaataaatgagaaagatttttac |
254 |
Q |
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| T |
7499620 |
cacagattcatcattcatagaagtgatcatgattgcagaaataaatgataaagatttttagataaatgattaagatttttac |
7499701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 7502967 - 7503107
Alignment:
| Q |
172 |
acacagattcatcattcatggaaatgatcat--gattgcagaaataaatgatcaagatttttaaataaatgagaa---agatttttacataaatgattaa |
266 |
Q |
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| T |
7502967 |
acacagattcatcattcatagaagtgatcatatgattgcagaaataaatgatcaatatttttacataaatgattaatgatatttttacataaatgatcag |
7503066 |
T |
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| Q |
267 |
gatttatacttaatgatcaagaaacataaaaaactgagaca |
307 |
Q |
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| T |
7503067 |
gatttttacttaatgatcaagaaacataaaaaactgggaca |
7503107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 7499722 - 7499787
Alignment:
| Q |
343 |
aaaactgagacatcattccaaagtcagccatgtattaactgatagtgcatacataaacaattagat |
408 |
Q |
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| T |
7499722 |
aaaactgagacatcattctaaaaccagccatgtattaacagatagtgcatatataaacaattagat |
7499787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 7502878 - 7502928
Alignment:
| Q |
79 |
agacatcgttccaaaaacagtgatattcaagcatgcattcagtaacaaaga |
129 |
Q |
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| T |
7502878 |
agacatcattccaaaaacagtgatatccaagcatgcaatcagtaacaaaga |
7502928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 7503119 - 7503160
Alignment:
| Q |
173 |
cacagattcatcattcatggaaatgatcatgattgcagaaat |
214 |
Q |
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| T |
7503119 |
cacaaattcatcattcatagaagtgatcatgattgcagaaat |
7503160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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