View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10100_high_1 (Length: 384)
Name: NF10100_high_1
Description: NF10100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10100_high_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 128 - 384
Target Start/End: Complemental strand, 45053991 - 45053743
Alignment:
| Q |
128 |
ttgaatttgattaactacttgtttggacccacggtgggagagggcccaaaaacacacaatgagttgattttgaaagaactgtgttaaaatgagataaact |
227 |
Q |
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| T |
45053991 |
ttgaatttgattaactacttgtttggacccacggtgggagagggcccaaaaacacacaatgagttgattttgaaagaactgtgttaaaatgagataaact |
45053892 |
T |
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| Q |
228 |
tatggctggtacttgctatattttataatacaaatgttcgaattaagactgttttgatgcatatccgagtttaagcgtcattctccaatcctgcatgtga |
327 |
Q |
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| T |
45053891 |
tatggttggtacttgctatattttataatacaaatgttcgaattaagactgttttgatgcatatccgagtttaagcgtcattctccaatcctgcatgtga |
45053792 |
T |
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| Q |
328 |
acaaaatatctcaatcgatgattagagaattaatccgtatcaactttgctaatttac |
384 |
Q |
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| T |
45053791 |
acaa--------aattgatgattagagaattaatccgtatcaactttgctaatttac |
45053743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 45054116 - 45054074
Alignment:
| Q |
1 |
gaaggcacgttttaatagattctcctagttgcagttctatgtc |
43 |
Q |
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| T |
45054116 |
gaaggcacgttttaatagattctcctagttacagttctatgtc |
45054074 |
T |
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